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Protein

Inner membrane permease YgbN

Gene

ygbN

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:B2740-MONOMER.
ECOL316407:JW2710-MONOMER.

Protein family/group databases

TCDBi2.A.8.1.7. the gluconate:h(+) symporter (gntp) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane permease YgbN
Gene namesi
Name:ygbN
Ordered Locus Names:b2740, JW2710
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13108. ygbN.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1PeriplasmicSequence analysis1
Transmembranei2 – 22HelicalSequence analysisAdd BLAST21
Topological domaini23 – 27CytoplasmicSequence analysis5
Transmembranei28 – 48HelicalSequence analysisAdd BLAST21
Topological domaini49 – 52PeriplasmicSequence analysis4
Transmembranei53 – 73HelicalSequence analysisAdd BLAST21
Topological domaini74 – 108CytoplasmicSequence analysisAdd BLAST35
Transmembranei109 – 129HelicalSequence analysisAdd BLAST21
Topological domaini130 – 137PeriplasmicSequence analysis8
Transmembranei138 – 158HelicalSequence analysisAdd BLAST21
Topological domaini159 – 174CytoplasmicSequence analysisAdd BLAST16
Transmembranei175 – 195HelicalSequence analysisAdd BLAST21
Topological domaini196 – 235PeriplasmicSequence analysisAdd BLAST40
Transmembranei236 – 256HelicalSequence analysisAdd BLAST21
Topological domaini257 – 273CytoplasmicSequence analysisAdd BLAST17
Transmembranei274 – 294HelicalSequence analysisAdd BLAST21
Topological domaini295 – 305PeriplasmicSequence analysisAdd BLAST11
Transmembranei306 – 326HelicalSequence analysisAdd BLAST21
Topological domaini327 – 341CytoplasmicSequence analysisAdd BLAST15
Transmembranei342 – 362HelicalSequence analysisAdd BLAST21
Topological domaini363 – 383PeriplasmicSequence analysisAdd BLAST21
Transmembranei384 – 404HelicalSequence analysisAdd BLAST21
Topological domaini405 – 433CytoplasmicSequence analysisAdd BLAST29
Transmembranei434 – 454HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000619431 – 454Inner membrane permease YgbNAdd BLAST454

Proteomic databases

PaxDbiQ46892.
PRIDEiQ46892.

Interactioni

Protein-protein interaction databases

BioGridi4260990. 160 interactors.
STRINGi511145.b2740.

Structurei

3D structure databases

ProteinModelPortaliQ46892.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GntP permease family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105C6Z. Bacteria.
COG2610. LUCA.
HOGENOMiHOG000237114.
InParanoidiQ46892.
KOiK03299.
OMAiGLRTWTV.
PhylomeDBiQ46892.

Family and domain databases

InterProiIPR003474. Glcn_transporter.
[Graphical view]
PfamiPF02447. GntP_permease. 1 hit.
[Graphical view]
PIRSFiPIRSF002746. Gluconate_transporter. 1 hit.
TIGRFAMsiTIGR00791. gntP. 1 hit.

Sequencei

Sequence statusi: Complete.

Q46892-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTITLLCIA LAGVIMLLLL VIKAKVQPFV ALLLVSLLVA LAAGIPAGEV
60 70 80 90 100
GKVMIAGMGG VLGSVTIIIG LGAMLGRMIE HSGGAESLAN YFSRKLGDKR
110 120 130 140 150
TIAALTLAAF FLGIPVFFDV GFIILAPIIY GFAKVAKISP LKFGLPVAGI
160 170 180 190 200
MLTVHVAVPP HPGPVAAAGL LHADIGWLTI IGIAISIPVG VVGYFAAKII
210 220 230 240 250
NKRQYAMSVE VLEQMQLAPA SEEGATKLSD KINPPGVALV TSLIVIPIAI
260 270 280 290 300
IMAGTVSATL MPPSHPLLGT LQLIGSPMVA LMIALVLAFW LLALRRGWSL
310 320 330 340 350
QHTSDIMGSA LPTAAVVILV TGAGGVFGKV LVESGVGKAL ANMLQMIDLP
360 370 380 390 400
LLPAAFIISL ALRASQGSAT VAILTTGGLL SEAVMGLNPI QCVLVTLAAC
410 420 430 440 450
FGGLGASHIN DSGFWIVTKY LGLSVADGLK TWTVLTTILG FTGFLITWCV

WAVI
Length:454
Mass (Da):46,770
Last modified:November 1, 1996 - v1
Checksum:i567B17E06586C2B9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69250.1.
U00096 Genomic DNA. Translation: AAC75782.1.
AP009048 Genomic DNA. Translation: BAE76817.1.
PIRiH65054.
RefSeqiNP_417220.1. NC_000913.3.
WP_000104441.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75782; AAC75782; b2740.
BAE76817; BAE76817; BAE76817.
GeneIDi947208.
KEGGiecj:JW2710.
eco:b2740.
PATRICi32120884. VBIEscCol129921_2834.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69250.1.
U00096 Genomic DNA. Translation: AAC75782.1.
AP009048 Genomic DNA. Translation: BAE76817.1.
PIRiH65054.
RefSeqiNP_417220.1. NC_000913.3.
WP_000104441.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ46892.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260990. 160 interactors.
STRINGi511145.b2740.

Protein family/group databases

TCDBi2.A.8.1.7. the gluconate:h(+) symporter (gntp) family.

Proteomic databases

PaxDbiQ46892.
PRIDEiQ46892.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75782; AAC75782; b2740.
BAE76817; BAE76817; BAE76817.
GeneIDi947208.
KEGGiecj:JW2710.
eco:b2740.
PATRICi32120884. VBIEscCol129921_2834.

Organism-specific databases

EchoBASEiEB2911.
EcoGeneiEG13108. ygbN.

Phylogenomic databases

eggNOGiENOG4105C6Z. Bacteria.
COG2610. LUCA.
HOGENOMiHOG000237114.
InParanoidiQ46892.
KOiK03299.
OMAiGLRTWTV.
PhylomeDBiQ46892.

Enzyme and pathway databases

BioCyciEcoCyc:B2740-MONOMER.
ECOL316407:JW2710-MONOMER.

Miscellaneous databases

PROiQ46892.

Family and domain databases

InterProiIPR003474. Glcn_transporter.
[Graphical view]
PfamiPF02447. GntP_permease. 1 hit.
[Graphical view]
PIRSFiPIRSF002746. Gluconate_transporter. 1 hit.
TIGRFAMsiTIGR00791. gntP. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYGBN_ECOLI
AccessioniPrimary (citable) accession number: Q46892
Secondary accession number(s): Q2MA89
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1996
Last modified: November 2, 2016
This is version 111 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.