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Protein

Uncharacterized oxidoreductase YgbJ

Gene

ygbJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei102 – 1021NADBy similarity
Active sitei178 – 1781By similarity
Binding sitei246 – 2461NADBy similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi10 – 2415NADBy similarityAdd
BLAST

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

NAD

Enzyme and pathway databases

BioCyciEcoCyc:G7417-MONOMER.
ECOL316407:JW2706-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized oxidoreductase YgbJ (EC:1.1.-.-)
Gene namesi
Name:ygbJ
Ordered Locus Names:b2736, JW2706
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13104. ygbJ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 302302Uncharacterized oxidoreductase YgbJPRO_0000173062Add
BLAST

Proteomic databases

PaxDbiQ46888.

Interactioni

Protein-protein interaction databases

BioGridi4261443. 17 interactions.
IntActiQ46888. 3 interactions.
STRINGi511145.b2736.

Structurei

3D structure databases

ProteinModelPortaliQ46888.
SMRiQ46888. Positions 6-292.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105ZXK. Bacteria.
COG2084. LUCA.
HOGENOMiHOG000219608.
InParanoidiQ46888.
KOiK08319.
OMAiAVIKIFP.
PhylomeDBiQ46888.

Family and domain databases

Gene3Di1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProiIPR002204. 3-OH-isobutyrate_DH-rel_CS.
IPR008927. 6-PGluconate_DH_C-like.
IPR013328. 6PGD_dom_2.
IPR006115. 6PGDH_NADP-bd.
IPR015815. HIBADH-related.
IPR016040. NAD(P)-bd_dom.
IPR029154. NADP-bd.
[Graphical view]
PfamiPF14833. NAD_binding_11. 1 hit.
PF03446. NAD_binding_2. 1 hit.
[Graphical view]
PIRSFiPIRSF000103. HIBADH. 1 hit.
SUPFAMiSSF48179. SSF48179. 1 hit.
SSF51735. SSF51735. 1 hit.
PROSITEiPS00895. 3_HYDROXYISOBUT_DH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q46888-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTGSEFHVG IVGLGSMGMG AALSYVRAGL STWGADLNSN ACATLKEAGA
60 70 80 90 100
CGVSDNAATF AEKLDALLVL VVNAAQVKQV LFGETGVAQH LKPGTAVMVS
110 120 130 140 150
STIASADAQE IATALAGFDL EMLDAPVSGG AVKAANGEMT VMASGSDIAF
160 170 180 190 200
ERLAPVLEAV AGKVYRIGAE PGLGSTVKII HQLLAGVHIA AGAEAMALAA
210 220 230 240 250
RAGIPLDVMY DVVTNAAGNS WMFENRMRHV VDGDYTPHSA VDIFVKDLGL
260 270 280 290 300
VADTAKALHF PLPLASTALN MFTSASNAGY GKEDDSAVIK IFSGITLPGA

KS
Length:302
Mass (Da):30,751
Last modified:November 1, 1996 - v1
Checksum:i09E94256EDDFC26C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69246.1.
U00096 Genomic DNA. Translation: AAC75778.1.
AP009048 Genomic DNA. Translation: BAE76813.1.
PIRiD65054.
RefSeqiNP_417216.1. NC_000913.3.
WP_000848004.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75778; AAC75778; b2736.
BAE76813; BAE76813; BAE76813.
GeneIDi947200.
KEGGiecj:JW2706.
eco:b2736.
PATRICi32120874. VBIEscCol129921_2829.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29579 Genomic DNA. Translation: AAA69246.1.
U00096 Genomic DNA. Translation: AAC75778.1.
AP009048 Genomic DNA. Translation: BAE76813.1.
PIRiD65054.
RefSeqiNP_417216.1. NC_000913.3.
WP_000848004.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ46888.
SMRiQ46888. Positions 6-292.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261443. 17 interactions.
IntActiQ46888. 3 interactions.
STRINGi511145.b2736.

Proteomic databases

PaxDbiQ46888.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75778; AAC75778; b2736.
BAE76813; BAE76813; BAE76813.
GeneIDi947200.
KEGGiecj:JW2706.
eco:b2736.
PATRICi32120874. VBIEscCol129921_2829.

Organism-specific databases

EchoBASEiEB2907.
EcoGeneiEG13104. ygbJ.

Phylogenomic databases

eggNOGiENOG4105ZXK. Bacteria.
COG2084. LUCA.
HOGENOMiHOG000219608.
InParanoidiQ46888.
KOiK08319.
OMAiAVIKIFP.
PhylomeDBiQ46888.

Enzyme and pathway databases

BioCyciEcoCyc:G7417-MONOMER.
ECOL316407:JW2706-MONOMER.

Miscellaneous databases

PROiQ46888.

Family and domain databases

Gene3Di1.10.1040.10. 1 hit.
3.40.50.720. 1 hit.
InterProiIPR002204. 3-OH-isobutyrate_DH-rel_CS.
IPR008927. 6-PGluconate_DH_C-like.
IPR013328. 6PGD_dom_2.
IPR006115. 6PGDH_NADP-bd.
IPR015815. HIBADH-related.
IPR016040. NAD(P)-bd_dom.
IPR029154. NADP-bd.
[Graphical view]
PfamiPF14833. NAD_binding_11. 1 hit.
PF03446. NAD_binding_2. 1 hit.
[Graphical view]
PIRSFiPIRSF000103. HIBADH. 1 hit.
SUPFAMiSSF48179. SSF48179. 1 hit.
SSF51735. SSF51735. 1 hit.
PROSITEiPS00895. 3_HYDROXYISOBUT_DH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGBJ_ECOLI
AccessioniPrimary (citable) accession number: Q46888
Secondary accession number(s): Q2MA93
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.