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Protein

Inner membrane protein YgiZ

Gene

ygiZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G7577-MONOMER.
ECOL316407:JW2995-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YgiZ
Gene namesi
Name:ygiZ
Ordered Locus Names:b3027, JW2995
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13028. ygiZ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 88CytoplasmicSequence analysis
Transmembranei9 – 2921HelicalSequence analysisAdd
BLAST
Topological domaini30 – 5324PeriplasmicSequence analysisAdd
BLAST
Transmembranei54 – 7421HelicalSequence analysisAdd
BLAST
Topological domaini75 – 839CytoplasmicSequence analysis
Transmembranei84 – 10421HelicalSequence analysisAdd
BLAST
Topological domaini105 – 1106PeriplasmicSequence analysis

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 110110Inner membrane protein YgiZPRO_0000169412Add
BLAST

Proteomic databases

PaxDbiQ46867.

Interactioni

Protein-protein interaction databases

BioGridi4263115. 9 interactions.
IntActiQ46867. 3 interactions.
STRINGi511145.b3027.

Structurei

3D structure databases

ProteinModelPortaliQ46867.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107DEU. Bacteria.
ENOG410Z1FQ. LUCA.
HOGENOMiHOG000125035.
OMAiSICSIPH.

Family and domain databases

InterProiIPR022553. DUF2645.
[Graphical view]
PfamiPF10840. DUF2645. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q46867-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKQKIKTIF EALLYIMLTY WLIDSFFAFN KYDWMLESGG NICSIPSVSG
60 70 80 90 100
EDRILQAMIA AFFLLTPLII LILRKLFMRE MFEFWVYVFS LGICLVCGWW
110
LFWGRFIFCY
Length:110
Mass (Da):13,201
Last modified:November 1, 1996 - v1
Checksum:i62B0333FD58CA4EA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69195.1.
U00096 Genomic DNA. Translation: AAC76063.1.
AP009048 Genomic DNA. Translation: BAE77083.1.
PIRiA65090.
RefSeqiNP_417499.1. NC_000913.3.
WP_000917684.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC76063; AAC76063; b3027.
BAE77083; BAE77083; BAE77083.
GeneIDi946450.
KEGGiecj:JW2995.
eco:b3027.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69195.1.
U00096 Genomic DNA. Translation: AAC76063.1.
AP009048 Genomic DNA. Translation: BAE77083.1.
PIRiA65090.
RefSeqiNP_417499.1. NC_000913.3.
WP_000917684.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ46867.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263115. 9 interactions.
IntActiQ46867. 3 interactions.
STRINGi511145.b3027.

Proteomic databases

PaxDbiQ46867.

Protocols and materials databases

DNASUi946450.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC76063; AAC76063; b3027.
BAE77083; BAE77083; BAE77083.
GeneIDi946450.
KEGGiecj:JW2995.
eco:b3027.

Organism-specific databases

EchoBASEiEB2846.
EcoGeneiEG13028. ygiZ.

Phylogenomic databases

eggNOGiENOG4107DEU. Bacteria.
ENOG410Z1FQ. LUCA.
HOGENOMiHOG000125035.
OMAiSICSIPH.

Enzyme and pathway databases

BioCyciEcoCyc:G7577-MONOMER.
ECOL316407:JW2995-MONOMER.

Miscellaneous databases

PROiQ46867.

Family and domain databases

InterProiIPR022553. DUF2645.
[Graphical view]
PfamiPF10840. DUF2645. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGIZ_ECOLI
AccessioniPrimary (citable) accession number: Q46867
Secondary accession number(s): Q2M9H3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.