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Protein

Probable transcriptional regulator YgiV

Gene

ygiV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Represses expression of mcbR.1 Publication

GO - Biological processi

  • negative regulation of transcription, DNA-templated Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Repressor

Keywords - Biological processi

Transcription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7573-MONOMER.
ECOL316407:JW5502-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable transcriptional regulator YgiV
Gene namesi
Name:ygiV
Ordered Locus Names:b3023, JW5502
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13024. ygiV.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 160160Probable transcriptional regulator YgiVPRO_0000201333Add
BLAST

Proteomic databases

PaxDbiQ46866.

Interactioni

Protein-protein interaction databases

BioGridi4259248. 65 interactions.
STRINGi511145.b3023.

Structurei

3D structure databases

ProteinModelPortaliQ46866.
SMRiQ46866. Positions 6-160.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105F4I. Bacteria.
COG3449. LUCA.
HOGENOMiHOG000125024.
InParanoidiQ46866.
KOiK07471.
OMAiDICGSVN.
OrthoDBiEOG628F3N.

Family and domain databases

Gene3Di3.20.80.10. 1 hit.
InterProiIPR010499. AraC_E-bd.
IPR029442. GyrI-like.
IPR011256. Reg_factor_effector_dom.
[Graphical view]
PfamiPF06445. GyrI-like. 1 hit.
[Graphical view]
SMARTiSM00871. AraC_E_bind. 1 hit.
[Graphical view]
SUPFAMiSSF55136. SSF55136. 1 hit.

Sequencei

Sequence statusi: Complete.

Q46866-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTNLTLDVNI IDFPSIPVAM LPHRCSPELL NYSVAKFIMW RKETGLSPVN
60 70 80 90 100
QSQTFGVAWD DPATTAPEAF RFDICGSVSE PIPDNRYGVS NGELTGGRYA
110 120 130 140 150
VARHVGELDD ISHTVWGIIR HWLPASGEKM RKAPILFHYT NLAEGVTEQR
160
LETDVYVPLA
Length:160
Mass (Da):17,827
Last modified:October 11, 2004 - v2
Checksum:iEEF5A02CBF2DCCF4
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti104 – 1052HV → QL in AAA69191 (PubMed:9278503).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69191.1.
U00096 Genomic DNA. Translation: AAT48162.1.
AP009048 Genomic DNA. Translation: BAE77079.1.
PIRiE65089.
RefSeqiWP_000183505.1. NZ_LN832404.1.
YP_026197.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48162; AAT48162; b3023.
BAE77079; BAE77079; BAE77079.
GeneIDi945805.
KEGGiecj:JW5502.
eco:b3023.
PATRICi32121458. VBIEscCol129921_3116.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69191.1.
U00096 Genomic DNA. Translation: AAT48162.1.
AP009048 Genomic DNA. Translation: BAE77079.1.
PIRiE65089.
RefSeqiWP_000183505.1. NZ_LN832404.1.
YP_026197.1. NC_000913.3.

3D structure databases

ProteinModelPortaliQ46866.
SMRiQ46866. Positions 6-160.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259248. 65 interactions.
STRINGi511145.b3023.

Proteomic databases

PaxDbiQ46866.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48162; AAT48162; b3023.
BAE77079; BAE77079; BAE77079.
GeneIDi945805.
KEGGiecj:JW5502.
eco:b3023.
PATRICi32121458. VBIEscCol129921_3116.

Organism-specific databases

EchoBASEiEB2842.
EcoGeneiEG13024. ygiV.

Phylogenomic databases

eggNOGiENOG4105F4I. Bacteria.
COG3449. LUCA.
HOGENOMiHOG000125024.
InParanoidiQ46866.
KOiK07471.
OMAiDICGSVN.
OrthoDBiEOG628F3N.

Enzyme and pathway databases

BioCyciEcoCyc:G7573-MONOMER.
ECOL316407:JW5502-MONOMER.

Miscellaneous databases

PROiQ46866.

Family and domain databases

Gene3Di3.20.80.10. 1 hit.
InterProiIPR010499. AraC_E-bd.
IPR029442. GyrI-like.
IPR011256. Reg_factor_effector_dom.
[Graphical view]
PfamiPF06445. GyrI-like. 1 hit.
[Graphical view]
SMARTiSM00871. AraC_E_bind. 1 hit.
[Graphical view]
SUPFAMiSSF55136. SSF55136. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: SEQUENCE REVISION TO 104-105.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Escherichia coli transcription factor YncC (McbR) regulates colanic acid and biofilm formation by repressing expression of periplasmic protein YbiM (McbA)."
    Zhang X.-S., Garcia-Contreras R., Wood T.K.
    ISME J. 2:615-631(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION.
    Strain: K12 / BW25113.

Entry informationi

Entry nameiYGIV_ECOLI
AccessioniPrimary (citable) accession number: Q46866
Secondary accession number(s): Q2M9H7, Q6BF52
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: October 11, 2004
Last modified: April 13, 2016
This is version 103 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.