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Protein

UPF0313 protein YgiQ

Gene

ygiQ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Cofactori

[4Fe-4S] clusterCuratedNote: Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.Curated

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi386Iron-sulfur (4Fe-4S-S-AdoMet)Sequence analysis1
Metal bindingi390Iron-sulfur (4Fe-4S-S-AdoMet)Sequence analysis1
Metal bindingi393Iron-sulfur (4Fe-4S-S-AdoMet)Sequence analysis1

GO - Molecular functioni

Keywordsi

Ligand4Fe-4S, Iron, Iron-sulfur, Metal-binding, S-adenosyl-L-methionine

Enzyme and pathway databases

BioCyciEcoCyc:G7568-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0313 protein YgiQ
Gene namesi
Name:ygiQ
Synonyms:ygiR
Ordered Locus Names:b4469, JW5501
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13019 ygiQ

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000763831 – 739UPF0313 protein YgiQAdd BLAST739

Proteomic databases

PaxDbiQ46861
PRIDEiQ46861

Interactioni

Protein-protein interaction databases

BioGridi4260933, 21 interactors
DIPiDIP-12224N
IntActiQ46861, 2 interactors
STRINGi316385.ECDH10B_3190

Structurei

3D structure databases

ProteinModelPortaliQ46861
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0313 family.Curated

Phylogenomic databases

eggNOGiENOG4105CCT Bacteria
COG1032 LUCA
HOGENOMiHOG000230440
InParanoidiQ46861
OMAiHDDAYTA
PhylomeDBiQ46861

Family and domain databases

Gene3Di3.80.30.20, 1 hit
HAMAPiMF_01251 UPF0313, 1 hit
InterProiView protein in InterPro
IPR006638 Elp3/MiaB/NifB
IPR020612 Methylthiotransferase_CS
IPR007197 rSAM
IPR023404 rSAM_horseshoe
IPR022946 UPF0313
IPR024560 UPF0313_C
IPR013704 UPF0313_N
PANTHERiPTHR32331 PTHR32331, 1 hit
PfamiView protein in Pfam
PF11842 DUF3362, 1 hit
PF04055 Radical_SAM, 1 hit
PF08497 Radical_SAM_N, 1 hit
SFLDiSFLDG01069 UPF0313, 1 hit
SFLDS00029 Radical_SAM, 1 hit
SMARTiView protein in SMART
SM00729 Elp3, 1 hit
TIGRFAMsiTIGR03904 SAM_YgiQ, 1 hit

Sequencei

Sequence statusi: Complete.

Q46861-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSISLIQPD RDLFSWPQYW AACFGPAPFL PMSREEMDQL GWDSCDIILV
60 70 80 90 100
TGDAYVDHPS FGMAICGRML EAQGFRVGII AQPDWSSKDD FMRLGKPNLF
110 120 130 140 150
FGVTAGNMDS MINRYTADRR LRHDDAYTPD NVAGKRPDRA TLVYTQRCKE
160 170 180 190 200
AWKDVPVILG GIEASLRRTA HYDYWSDTVR RSVLVDSKAD MLMFGNGERP
210 220 230 240 250
LVEVAHRLAM GEPISEIRDV RNTAIIVKEA LPGWSGVDST RLDTPGKIDP
260 270 280 290 300
IPHPYGEDLP CADNKPVAPK KQEAKAVTVQ PPRPKPWEKT YVLLPSFEKV
310 320 330 340 350
KGDKVLYAHA SRILHHETNP GCARALMQKH GDRYVWINPP AIPLSTEEMD
360 370 380 390 400
SVFALPYKRV PHPAYGNARI PAYEMIRFSV NIMRGCFGGC SFCSITEHEG
410 420 430 440 450
RIIQSRSEDS IINEIEAIRD TVPGFTGVIS DLGGPTANMY MLRCKSPRAE
460 470 480 490 500
QTCRRLSCVY PDICPHMDTN HEPTINLYRR ARDLKGIKKI LIASGVRYDI
510 520 530 540 550
AVEDPRYIKE LATHHVGGYL KIAPEHTEEG PLSKMMKPGM GSYDRFKELF
560 570 580 590 600
DTYSKQAGKE QYLIPYFISA HPGTRDEDMV NLALWLKKHR FRLDQVQNFY
610 620 630 640 650
PSPLANSTTM YYTGKNPLAK IGYKSEDVFV PKGDKQRRLH KALLRYHDPA
660 670 680 690 700
NWPLIRQALE AMGKKHLIGS RRDCLVPAPT IEEMREARRQ NRNTRPALTK
710 720 730
HTPMATQRQT PATAKKASST QSRPVNAGAK KRPKAAVGR
Length:739
Mass (Da):83,478
Last modified:November 23, 2004 - v3
Checksum:iF85248757612026B
GO

Sequence cautioni

The sequence AAA69183 differs from that shown. Reason: Frameshift at position 321.Curated
The sequence AAA69184 differs from that shown. Reason: Frameshift at position 321.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA Translation: AAA69183.1 Frameshift.
U28377 Genomic DNA Translation: AAA69184.1 Frameshift.
U00096 Genomic DNA Translation: AAT48161.1
AP009048 Genomic DNA Translation: BAE77072.1
RefSeqiWP_000095187.1, NZ_LN832404.1
YP_026196.1, NC_000913.3

Genome annotation databases

EnsemblBacteriaiAAT48161; AAT48161; b4469
BAE77072; BAE77072; BAE77072
GeneIDi948963
KEGGiecj:JW5501
eco:b4469
PATRICifig|1411691.4.peg.3714

Similar proteinsi

Entry informationi

Entry nameiYGIQ_ECOLI
AccessioniPrimary (citable) accession number: Q46861
Secondary accession number(s): Q2M9I4, Q46862, Q6BF53
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 23, 2004
Last modified: March 28, 2018
This is version 121 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health