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Protein

Uncharacterized HTH-type transcriptional regulator YqhC

Gene

yqhC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi229 – 248H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

  • bacterial-type proximal promoter sequence-specific DNA binding Source: EcoCyc
  • transcriptional activator activity, bacterial-type RNA polymerase proximal promoter sequence-specific DNA binding Source: EcoCyc

GO - Biological processi

  • positive regulation of transcription, DNA-templated Source: EcoCyc
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7563-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YqhC
Gene namesi
Name:yqhC
Ordered Locus Names:b3010, JW5849
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13013 yqhC

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001946181 – 318Uncharacterized HTH-type transcriptional regulator YqhCAdd BLAST318

Proteomic databases

PaxDbiQ46855
PRIDEiQ46855

Interactioni

Protein-protein interaction databases

BioGridi4262379, 29 interactors
IntActiQ46855, 6 interactors
STRINGi316385.ECDH10B_3185

Structurei

3D structure databases

ProteinModelPortaliQ46855
SMRiQ46855
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105CF7 Bacteria
ENOG410XRKV LUCA
HOGENOMiHOG000203204
InParanoidiQ46855
OMAiMYQPGIV
PhylomeDBiQ46855

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR018060 HTH_AraC
IPR009594 Tscrpt_reg_HTH_AraC_N
PfamiView protein in Pfam
PF06719 AraC_N, 1 hit
PF12833 HTH_18, 1 hit
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 2 hits
PROSITEiView protein in PROSITE
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q46855-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLQNCAQSNC RIIPKKLRDM KREEICRLLA DKVNKLKNKE NSLSGLLPDV
60 70 80 90 100
RLLYGETPFA RTPVMYEPGI IILFSGHKIG YINERVFRYD ANEYLLLTVP
110 120 130 140 150
LPFECETYAT SEVPLAGLRL NVDILQLQEL LMDIGEDEHF QPSMAASGIN
160 170 180 190 200
SATLSEEILC AAERLLDVME RPLDARILGK QIIREILYYV LTGPCGGALL
210 220 230 240 250
ALVSRQTHFS LISRVLKRIE NKYTENLSVE QLAAEANMSV SAFHHNFKSV
260 270 280 290 300
TSTSPLQYLK NYRLHKARMM IIHDGMKASA AAMRVGYESA SQFSREFKRY
310
FGVTPGEDAA RMRAMQGN
Length:318
Mass (Da):35,957
Last modified:May 30, 2000 - v2
Checksum:i87D5307551EF2D03
GO

Sequence cautioni

The sequence AAA69177 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA Translation: AAA69177.1 Different initiation.
U00096 Genomic DNA Translation: AAC76046.2
AP009048 Genomic DNA Translation: BAE77067.1
PIRiH65087
RefSeqiNP_417483.2, NC_000913.3
WP_001350547.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76046; AAC76046; b3010
BAE77067; BAE77067; BAE77067
GeneIDi947491
KEGGiecj:JW5849
eco:b3010
PATRICifig|1411691.4.peg.3720

Similar proteinsi

Entry informationi

Entry nameiYQHC_ECOLI
AccessioniPrimary (citable) accession number: Q46855
Secondary accession number(s): Q2M9I9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: May 30, 2000
Last modified: March 28, 2018
This is version 120 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health