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Protein

Putative uncharacterized protein YghO

Gene

yghO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

  • DNA binding Source: EcoCyc

GO - Biological processi

  • regulation of transcription, DNA-templated Source: EcoCyc
  • single-species biofilm formation Source: EcoCyc
  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7547-MONOMER.
ECOL316407:JW5848-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein YghO
Gene namesi
Name:yghO
Ordered Locus Names:b2981, JW5848
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12999. yghO.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini‹1 – 366›366Putative uncharacterized protein YghOPRO_0000169388Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4263151. 4 interactions.
DIPiDIP-12207N.
IntActiQ46840. 1 interaction.
STRINGi316407.85675789.

Structurei

3D structure databases

ProteinModelPortaliQ46840.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000014460.
InParanoidiQ46840.
OMAiAWEKNWG.
PhylomeDBiQ46840.

Family and domain databases

Gene3Di3.40.630.30. 1 hit.
InterProiIPR016181. Acyl_CoA_acyltransferase.
[Graphical view]
SUPFAMiSSF55729. SSF55729. 2 hits.

Sequencei

Sequence statusi: Fragment.

Q46840-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
NKNDLKAFIA FPSSLYPDDP NWIPPLFIER NEHLSAKNPG TDHIIWQAWV
60 70 80 90 100
AKKAGQIVGR ITAQIDTLHR ERYGKDTGHF GMIDAIDDPQ VFAALFGAAE
110 120 130 140 150
AWLKSQGASK ISGPFSLNIN QESGLLIEGF DTPPCAMMPH GKPWYAAHIE
160 170 180 190 200
QLGYHKGIDL LAWWMQRTDL TFSPALKKLM DQVRKKVTIR CINRQRFAEE
210 220 230 240 250
MQILREIFNS GWQHNWGFVP FTEHEFATMG DQLKYLVPDD MIYIAEIDSA
260 270 280 290 300
PCAFIVGLPN INEAIADLNG SLFPFGWAKL LWRLKVSGVR TARVPLMGVR
310 320 330 340 350
DEYQFSRIGP VIALLLIEAL RDPFARRKID ALEMSWILET NTGMNNMLER
360
IGAEPYKRYR LYEKQI
Length:366
Mass (Da):41,804
Last modified:June 1, 2001 - v2
Checksum:iBB7AB349A49DB83A
GO

Sequence cautioni

The sequence AAA69148 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAE77042 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69148.1. Different initiation.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE77042.1. Different initiation.
PIRiC65084.

Genome annotation databases

EnsemblBacteriaiBAE77042; BAE77042; BAE77042.
KEGGiecj:JW5848.
PATRICi48665407. VBIEscCol107702_3012.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA. Translation: AAA69148.1. Different initiation.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE77042.1. Different initiation.
PIRiC65084.

3D structure databases

ProteinModelPortaliQ46840.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263151. 4 interactions.
DIPiDIP-12207N.
IntActiQ46840. 1 interaction.
STRINGi316407.85675789.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE77042; BAE77042; BAE77042.
KEGGiecj:JW5848.
PATRICi48665407. VBIEscCol107702_3012.

Organism-specific databases

EchoBASEiEB2822.
EcoGeneiEG12999. yghO.

Phylogenomic databases

HOGENOMiHOG000014460.
InParanoidiQ46840.
OMAiAWEKNWG.
PhylomeDBiQ46840.

Enzyme and pathway databases

BioCyciEcoCyc:G7547-MONOMER.
ECOL316407:JW5848-MONOMER.

Family and domain databases

Gene3Di3.40.630.30. 1 hit.
InterProiIPR016181. Acyl_CoA_acyltransferase.
[Graphical view]
SUPFAMiSSF55729. SSF55729. 2 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiYGHO_ECOLI
AccessioniPrimary (citable) accession number: Q46840
Secondary accession number(s): Q2M9L4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 1, 2001
Last sequence update: June 1, 2001
Last modified: January 20, 2016
This is version 104 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. The original protein is truncated by the IS5LO element which is inserted right before residue 1. What was the original N-terminal of this protein is not known.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.