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Q46834 (YGHF_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 98. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative type II secretion system C-type protein YghF
Alternative name(s):
Putative general secretion pathway C-type protein YghF
Gene names
Name:yghF
Ordered Locus Names:b2970, JW5484
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length288 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceUncertain

General annotation (Comments)

Function

Might be involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins Potential.

Subcellular location

Periplasm Potential.

Sequence similarities

Belongs to the GSP C family.

Caution

Could be the product of a pseudogene.

Ontologies

Keywords
   Biological processProtein transport
Transport
   Cellular componentPeriplasm
   DomainSignal
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processprotein secretion by the type II secretion system

Inferred from electronic annotation. Source: InterPro

   Cellular_componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

type II protein secretion system complex

Inferred from electronic annotation. Source: InterPro

   Molecular_functionprotein transporter activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2424 Potential
Chain25 – 288264Putative type II secretion system C-type protein YghF
PRO_0000013096

Sequences

Sequence LengthMass (Da)Tools
Q46834 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: F1750A8BEB4DC6AF

FASTA28832,120
        10         20         30         40         50         60 
MFWLMLLIIS AKMAHSLWRY ISFSAEYTAV SQPVNKPSRV DAKTFDKNDV QLISQQNWFG 

        70         80         90        100        110        120 
KYQPVAAQVK QPEPVPVAET RLNVVLRGIA FGARPGAVIE EGGKQQVYLQ GETLGSHNAV 

       130        140        150        160        170        180 
IEEINRDHVM LRYQGKIERL SLAEEERSTV AVTNKKAVSD EAKQAVAEPA VSVPVEIPAA 

       190        200        210        220        230        240 
VRQALAKDPQ KIFNYIQLTP VRKEGIVGYA AKPGADRSLF DASGFKEGDI AIALNQQDFT 

       250        260        270        280 
DPRAMIALMR QLPSMDSIQL TVLRKGARHD ISIALRYRLF CPPYWKKS 

« Hide

References

[1]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[2]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U28377 Genomic DNA. Translation: AAA69137.1.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE77031.1.
PIRH65082.
RefSeqYP_491167.1. NC_007779.1.

3D structure databases

ProteinModelPortalQ46834.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-12204N.
IntActQ46834. 1 interaction.
STRING316407.yghF.

Proteomic databases

PRIDEQ46834.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAE77031; BAE77031; BAE77031.
GeneID12932902.
KEGGecj:Y75_p2899.
PATRIC48665382. VBIEscCol107702_3000.

Organism-specific databases

EchoBASEEB2814.
EcoGeneEG12990. yghF.

Phylogenomic databases

eggNOGCOG3031.
HOGENOMHOG000124892.
KOK02452.
OMAIANRGKQ.

Enzyme and pathway databases

BioCycEcoCyc:G7537-MONOMER.
ECOL316407:JW5484-MONOMER.

Gene expression databases

GenevestigatorQ46834.

Family and domain databases

Gene3D2.30.42.10. 1 hit.
InterProIPR001478. PDZ.
IPR001639. T2SS_protein-C.
[Graphical view]
SUPFAMSSF50156. SSF50156. 1 hit.
TIGRFAMsTIGR01713. typeII_sec_gspC. 1 hit.
PROSITEPS01141. T2SP_C. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameYGHF_ECOLI
AccessionPrimary (citable) accession number: Q46834
Secondary accession number(s): Q2M9M5
Entry history
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: November 1, 1996
Last modified: June 11, 2014
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene