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Q46834

- YGHF_ECOLI

UniProt

Q46834 - YGHF_ECOLI

Protein

Putative type II secretion system C-type protein YghF

Gene

yghF

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Protein uncertaini
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    • History
      Entry version 99 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Might be involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.Curated

    GO - Molecular functioni

    1. protein transporter activity Source: InterPro

    GO - Biological processi

    1. protein secretion by the type II secretion system Source: InterPro

    Keywords - Biological processi

    Protein transport, Transport

    Enzyme and pathway databases

    BioCyciEcoCyc:G7537-MONOMER.
    ECOL316407:JW5484-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative type II secretion system C-type protein YghF
    Alternative name(s):
    Putative general secretion pathway C-type protein YghF
    Gene namesi
    Name:yghF
    Ordered Locus Names:b2970, JW5484
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG12990. yghF.

    Subcellular locationi

    Periplasm Curated

    GO - Cellular componenti

    1. periplasmic space Source: UniProtKB-SubCell
    2. type II protein secretion system complex Source: InterPro

    Keywords - Cellular componenti

    Periplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2424Sequence AnalysisAdd
    BLAST
    Chaini25 – 288264Putative type II secretion system C-type protein YghFPRO_0000013096Add
    BLAST

    Proteomic databases

    PRIDEiQ46834.

    Expressioni

    Gene expression databases

    GenevestigatoriQ46834.

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-12204N.
    IntActiQ46834. 1 interaction.
    STRINGi316407.yghF.

    Structurei

    3D structure databases

    ProteinModelPortaliQ46834.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the GSP C family.Curated

    Keywords - Domaini

    Signal

    Phylogenomic databases

    eggNOGiCOG3031.
    HOGENOMiHOG000124892.
    KOiK02452.
    OMAiIANRGKQ.

    Family and domain databases

    Gene3Di2.30.42.10. 1 hit.
    InterProiIPR001478. PDZ.
    IPR001639. T2SS_protein-C.
    [Graphical view]
    SUPFAMiSSF50156. SSF50156. 1 hit.
    TIGRFAMsiTIGR01713. typeII_sec_gspC. 1 hit.
    PROSITEiPS01141. T2SP_C. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q46834-1 [UniParc]FASTAAdd to Basket

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    MFWLMLLIIS AKMAHSLWRY ISFSAEYTAV SQPVNKPSRV DAKTFDKNDV    50
    QLISQQNWFG KYQPVAAQVK QPEPVPVAET RLNVVLRGIA FGARPGAVIE 100
    EGGKQQVYLQ GETLGSHNAV IEEINRDHVM LRYQGKIERL SLAEEERSTV 150
    AVTNKKAVSD EAKQAVAEPA VSVPVEIPAA VRQALAKDPQ KIFNYIQLTP 200
    VRKEGIVGYA AKPGADRSLF DASGFKEGDI AIALNQQDFT DPRAMIALMR 250
    QLPSMDSIQL TVLRKGARHD ISIALRYRLF CPPYWKKS 288
    Length:288
    Mass (Da):32,120
    Last modified:November 1, 1996 - v1
    Checksum:iF1750A8BEB4DC6AF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U28377 Genomic DNA. Translation: AAA69137.1.
    U00096 Genomic DNA. No translation available.
    AP009048 Genomic DNA. Translation: BAE77031.1.
    PIRiH65082.
    RefSeqiYP_491167.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiBAE77031; BAE77031; BAE77031.
    GeneIDi12932902.
    KEGGiecj:Y75_p2899.
    PATRICi48665382. VBIEscCol107702_3000.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U28377 Genomic DNA. Translation: AAA69137.1 .
    U00096 Genomic DNA. No translation available.
    AP009048 Genomic DNA. Translation: BAE77031.1 .
    PIRi H65082.
    RefSeqi YP_491167.1. NC_007779.1.

    3D structure databases

    ProteinModelPortali Q46834.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-12204N.
    IntActi Q46834. 1 interaction.
    STRINGi 316407.yghF.

    Proteomic databases

    PRIDEi Q46834.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAE77031 ; BAE77031 ; BAE77031 .
    GeneIDi 12932902.
    KEGGi ecj:Y75_p2899.
    PATRICi 48665382. VBIEscCol107702_3000.

    Organism-specific databases

    EchoBASEi EB2814.
    EcoGenei EG12990. yghF.

    Phylogenomic databases

    eggNOGi COG3031.
    HOGENOMi HOG000124892.
    KOi K02452.
    OMAi IANRGKQ.

    Enzyme and pathway databases

    BioCyci EcoCyc:G7537-MONOMER.
    ECOL316407:JW5484-MONOMER.

    Gene expression databases

    Genevestigatori Q46834.

    Family and domain databases

    Gene3Di 2.30.42.10. 1 hit.
    InterProi IPR001478. PDZ.
    IPR001639. T2SS_protein-C.
    [Graphical view ]
    SUPFAMi SSF50156. SSF50156. 1 hit.
    TIGRFAMsi TIGR01713. typeII_sec_gspC. 1 hit.
    PROSITEi PS01141. T2SP_C. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

    Entry informationi

    Entry nameiYGHF_ECOLI
    AccessioniPrimary (citable) accession number: Q46834
    Secondary accession number(s): Q2M9M5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 15, 1998
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 99 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Caution

    Could be the product of a pseudogene.Curated

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3