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Protein

Putative type II secretion system M-type protein YghD

Gene

yghD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.By similarity

GO - Biological processi

Keywordsi

Biological processProtein transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:G7535-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Putative type II secretion system M-type protein YghD
Short name:
Putative T2SS M-type protein YghD
Alternative name(s):
Putative extracytoplasmic function protein C
Putative general secretion pathway M-type protein YghD
Gene namesi
Name:yghD
Synonyms:ecfC
Ordered Locus Names:b2968, JW2935
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12988 yghD

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 39CytoplasmicSequence analysisAdd BLAST39
Transmembranei40 – 60HelicalSequence analysisAdd BLAST21
Topological domaini61 – 178PeriplasmicSequence analysisAdd BLAST118

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002073291 – 178Putative type II secretion system M-type protein YghDAdd BLAST178

Proteomic databases

PaxDbiQ46832
PRIDEiQ46832

Interactioni

Protein-protein interaction databases

BioGridi4262353, 1187 interactors
STRINGi316385.ECDH10B_3145

Structurei

3D structure databases

ProteinModelPortaliQ46832
SMRiQ46832
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the GSP M family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105U1E Bacteria
COG3149 LUCA
HOGENOMiHOG000124859
InParanoidiQ46832
KOiK02462
OMAiPQGNKIQ

Family and domain databases

InterProiView protein in InterPro
IPR007690 T2SS_M
IPR023229 T2SS_M_periplasmic_sf
PfamiView protein in Pfam
PF04612 T2SSM, 1 hit
PIRSFiPIRSF006291 GspM, 1 hit
SUPFAMiSSF103054 SSF103054, 1 hit

Sequencei

Sequence statusi: Complete.

Q46832-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLRDKFIHYF QQWRERQLSR GEHWLAQHLA GRSPREKGML LAAVVFLFSV
60 70 80 90 100
GYYVLIWQPL SERIEQQETI LQQLVAMNTR LKNAAPDIIA ARKSATTTPA
110 120 130 140 150
QVSRVISDSA SAHSVVIRRI ADRGENIQVW IEPVVFNDLL KWLNALDEKY
160 170
ALRVTQIDVS AAEKPGMVNV QRLEFGRG
Length:178
Mass (Da):20,395
Last modified:November 1, 1996 - v1
Checksum:i18822CED9B5BF022
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28377 Genomic DNA Translation: AAA69135.1
U00096 Genomic DNA Translation: AAC76004.1
AP009048 Genomic DNA Translation: BAE77030.1
PIRiF65082
RefSeqiNP_417442.1, NC_000913.3
WP_000942785.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC76004; AAC76004; b2968
BAE77030; BAE77030; BAE77030
GeneIDi947025
KEGGiecj:JW2935
eco:b2968
PATRICifig|1411691.4.peg.3763

Similar proteinsi

Entry informationi

Entry nameiYGHD_ECOLI
AccessioniPrimary (citable) accession number: Q46832
Secondary accession number(s): Q2M9M6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: March 28, 2018
This is version 111 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health