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Protein

Putative electron transport protein YgfS

Gene

ygfS

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi12 – 121Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi15 – 151Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi18 – 181Iron-sulfur 1 (4Fe-4S)By similarity
Metal bindingi22 – 221Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi55 – 551Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi58 – 581Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi63 – 631Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi67 – 671Iron-sulfur 4 (4Fe-4S)By similarity
Metal bindingi86 – 861Iron-sulfur 4 (4Fe-4S)By similarity
Metal bindingi89 – 891Iron-sulfur 4 (4Fe-4S)By similarity
Metal bindingi92 – 921Iron-sulfur 4 (4Fe-4S)By similarity
Metal bindingi96 – 961Iron-sulfur 3 (4Fe-4S)By similarity
Metal bindingi117 – 1171Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi120 – 1201Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi129 – 1291Iron-sulfur 2 (4Fe-4S)By similarity
Metal bindingi133 – 1331Iron-sulfur 1 (4Fe-4S)By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7505-MONOMER.
ECOL316407:JW5468-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative electron transport protein YgfS
Gene namesi
Name:ygfS
Ordered Locus Names:b2886, JW5468
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13069. ygfS.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 162162Putative electron transport protein YgfSPRO_0000159305Add
BLAST

Proteomic databases

PaxDbiQ46819.
PRIDEiQ46819.

Interactioni

Protein-protein interaction databases

BioGridi4259229. 14 interactions.
STRINGi511145.b2886.

Structurei

3D structure databases

ProteinModelPortaliQ46819.
SMRiQ46819. Positions 12-135.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 32304Fe-4S ferredoxin-type 1PROSITE-ProRule annotationAdd
BLAST
Domaini45 – 77334Fe-4S ferredoxin-type 2PROSITE-ProRule annotationAdd
BLAST
Domaini77 – 106304Fe-4S ferredoxin-type 3PROSITE-ProRule annotationAdd
BLAST
Domaini110 – 143344Fe-4S ferredoxin-type 4PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 4 4Fe-4S ferredoxin-type domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4108R8B. Bacteria.
COG1142. LUCA.
HOGENOMiHOG000163385.
InParanoidiQ46819.
OMAiSVPVMCH.
OrthoDBiEOG6XSZQF.
PhylomeDBiQ46819.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13247. Fer4_11. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q46819-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSLIIVNPA DCIGCRTCEV ACVVAHPSEQ ELNADVFLPR LKVQRLDSIS
60 70 80 90 100
APVMCHQCEN APCVGACPVG ALTMGEQVVQ TNSARCIGCQ SCVSACPFGM
110 120 130 140 150
ITIQSLPGDT RQQIVKCDLC EQREEGPACV ESCPTQALQL LTERELRRVR
160
QQRIVASGEN PL
Length:162
Mass (Da):17,513
Last modified:May 30, 2000 - v2
Checksum:i22F20225873708A0
GO

Sequence cautioni

The sequence AAA83067.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83067.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75924.2.
AP009048 Genomic DNA. Translation: BAE76951.1.
PIRiF65072.
RefSeqiNP_417362.4. NC_000913.3.
WP_000838428.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75924; AAC75924; b2886.
BAE76951; BAE76951; BAE76951.
GeneIDi949016.
KEGGiecj:JW5468.
eco:b2886.
PATRICi32121180. VBIEscCol129921_2978.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83067.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75924.2.
AP009048 Genomic DNA. Translation: BAE76951.1.
PIRiF65072.
RefSeqiNP_417362.4. NC_000913.3.
WP_000838428.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliQ46819.
SMRiQ46819. Positions 12-135.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259229. 14 interactions.
STRINGi511145.b2886.

Proteomic databases

PaxDbiQ46819.
PRIDEiQ46819.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75924; AAC75924; b2886.
BAE76951; BAE76951; BAE76951.
GeneIDi949016.
KEGGiecj:JW5468.
eco:b2886.
PATRICi32121180. VBIEscCol129921_2978.

Organism-specific databases

EchoBASEiEB2880.
EcoGeneiEG13069. ygfS.

Phylogenomic databases

eggNOGiENOG4108R8B. Bacteria.
COG1142. LUCA.
HOGENOMiHOG000163385.
InParanoidiQ46819.
OMAiSVPVMCH.
OrthoDBiEOG6XSZQF.
PhylomeDBiQ46819.

Enzyme and pathway databases

BioCyciEcoCyc:G7505-MONOMER.
ECOL316407:JW5468-MONOMER.

Miscellaneous databases

PROiQ46819.

Family and domain databases

InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
[Graphical view]
PfamiPF13247. Fer4_11. 1 hit.
[Graphical view]
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYGFS_ECOLI
AccessioniPrimary (citable) accession number: Q46819
Secondary accession number(s): Q2M9V5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: May 30, 2000
Last modified: June 8, 2016
This is version 111 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.