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Protein

Uncharacterized protein YgeW

Gene

ygeW

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7489-MONOMER.
ECOL316407:JW5463-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YgeW
Gene namesi
Name:ygeW
Ordered Locus Names:b2870, JW5463
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13053. ygeW.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 396396Uncharacterized protein YgeWPRO_0000113263Add
BLAST

Proteomic databases

PaxDbiQ46803.

Interactioni

Protein-protein interaction databases

BioGridi4261510. 9 interactions.
STRINGi511145.b2870.

Structurei

Secondary structure

1
396
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi2 – 1312Combined sources
Helixi19 – 213Combined sources
Helixi27 – 293Combined sources
Helixi32 – 5019Combined sources
Beta strandi62 – 687Combined sources
Helixi77 – 859Combined sources
Beta strandi88 – 914Combined sources
Helixi105 – 1117Combined sources
Beta strandi116 – 1238Combined sources
Helixi133 – 14614Combined sources
Beta strandi155 – 1606Combined sources
Helixi166 – 18015Combined sources
Beta strandi181 – 1833Combined sources
Helixi184 – 1863Combined sources
Beta strandi190 – 1945Combined sources
Helixi206 – 21510Combined sources
Helixi216 – 2183Combined sources
Beta strandi221 – 2255Combined sources
Helixi234 – 24714Combined sources
Beta strandi250 – 2556Combined sources
Helixi257 – 2615Combined sources
Beta strandi265 – 2695Combined sources
Helixi275 – 28612Combined sources
Helixi290 – 30516Combined sources
Turni306 – 3094Combined sources
Helixi314 – 3185Combined sources
Helixi321 – 3233Combined sources
Beta strandi339 – 3424Combined sources
Beta strandi344 – 3463Combined sources
Helixi347 – 36216Combined sources
Helixi364 – 37613Combined sources
Helixi380 – 39011Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3Q98X-ray2.00A1-396[»]
ProteinModelPortaliQ46803.
SMRiQ46803. Positions 1-396.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ46803.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATCase/OTCase family.Curated

Phylogenomic databases

eggNOGiENOG4105IW6. Bacteria.
COG0078. LUCA.
HOGENOMiHOG000022686.
InParanoidiQ46803.
OMAiIDHPTQA.
OrthoDBiEOG66F03Q.
PhylomeDBiQ46803.

Family and domain databases

Gene3Di3.40.50.1370. 2 hits.
InterProiIPR006132. Asp/Orn_carbamoyltranf_P-bd.
IPR006130. Asp/Orn_carbamoylTrfase.
IPR002082. Asp_carbamoyltransf.
IPR006131. Asp_carbamoyltransf_Asp/Orn-bd.
IPR017702. Carbamoyltransferase_YgeW.
[Graphical view]
PfamiPF00185. OTCace. 1 hit.
PF02729. OTCace_N. 1 hit.
[Graphical view]
PRINTSiPR00100. AOTCASE.
PR00101. ATCASE.
SUPFAMiSSF53671. SSF53671. 1 hit.
TIGRFAMsiTIGR03316. ygeW. 1 hit.

Sequencei

Sequence statusi: Complete.

Q46803-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMKTVNELIK DINSLTSHLH EKDFLLTWEQ TPDELKQVLD VAAALKALRA
60 70 80 90 100
ENISTKVFNS GLGISVFRDN STRTRFSYAS ALNLLGLAQQ DLDEGKSQIA
110 120 130 140 150
HGETVRETAN MISFCADAIG IRDDMYLGAG NAYMREVGAA LDDGYKQGVL
160 170 180 190 200
PQRPALVNLQ CDIDHPTQSM ADLAWLREHF GSLENLKGKK IAMTWAYSPS
210 220 230 240 250
YGKPLSVPQG IIGLMTRFGM DVTLAHPEGY DLIPDVVEVA KNNAKASGGS
260 270 280 290 300
FRQVTSMEEA FKDADIVYPK SWAPYKVMEE RTELLRANDH EGLKALEKQC
310 320 330 340 350
LAQNAQHKDW HCTEEMMELT RDGEALYMHC LPADISGVSC KEGEVTEGVF
360 370 380 390
EKYRIATYKE ASWKPYIIAA MILSRKYAKP GALLEQLLKE AQERVK
Length:396
Mass (Da):44,187
Last modified:October 11, 2004 - v2
Checksum:i62C5A199BB31FD46
GO

Sequence cautioni

The sequence AAA83051.1 differs from that shown. Reason: Frameshift at positions 18 and 373. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83051.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48152.1.
AP009048 Genomic DNA. Translation: BAE76936.1.
PIRiF65070.
RefSeqiYP_026185.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAT48152; AAT48152; b2870.
BAE76936; BAE76936; BAE76936.
GeneIDi945826.
KEGGiecj:JW5463.
eco:b2870.
PATRICi32121150. VBIEscCol129921_2963.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83051.1. Frameshift.
U00096 Genomic DNA. Translation: AAT48152.1.
AP009048 Genomic DNA. Translation: BAE76936.1.
PIRiF65070.
RefSeqiYP_026185.1. NC_000913.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3Q98X-ray2.00A1-396[»]
ProteinModelPortaliQ46803.
SMRiQ46803. Positions 1-396.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261510. 9 interactions.
STRINGi511145.b2870.

Proteomic databases

PaxDbiQ46803.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAT48152; AAT48152; b2870.
BAE76936; BAE76936; BAE76936.
GeneIDi945826.
KEGGiecj:JW5463.
eco:b2870.
PATRICi32121150. VBIEscCol129921_2963.

Organism-specific databases

EchoBASEiEB2865.
EcoGeneiEG13053. ygeW.

Phylogenomic databases

eggNOGiENOG4105IW6. Bacteria.
COG0078. LUCA.
HOGENOMiHOG000022686.
InParanoidiQ46803.
OMAiIDHPTQA.
OrthoDBiEOG66F03Q.
PhylomeDBiQ46803.

Enzyme and pathway databases

BioCyciEcoCyc:G7489-MONOMER.
ECOL316407:JW5463-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ46803.
PROiQ46803.

Family and domain databases

Gene3Di3.40.50.1370. 2 hits.
InterProiIPR006132. Asp/Orn_carbamoyltranf_P-bd.
IPR006130. Asp/Orn_carbamoylTrfase.
IPR002082. Asp_carbamoyltransf.
IPR006131. Asp_carbamoyltransf_Asp/Orn-bd.
IPR017702. Carbamoyltransferase_YgeW.
[Graphical view]
PfamiPF00185. OTCace. 1 hit.
PF02729. OTCace_N. 1 hit.
[Graphical view]
PRINTSiPR00100. AOTCASE.
PR00101. ATCASE.
SUPFAMiSSF53671. SSF53671. 1 hit.
TIGRFAMsiTIGR03316. ygeW. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: SEQUENCE REVISION.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYGEW_ECOLI
AccessioniPrimary (citable) accession number: Q46803
Secondary accession number(s): Q2M9X0, Q6BF62
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: October 11, 2004
Last modified: February 17, 2016
This is version 108 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.