Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative uncharacterized response regulatory protein YgeK

Gene

ygeK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi165 – 18420H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7475-MONOMER.
EcoCyc:G7476-MONOMER.
ECOL316407:JW2824-MONOMER.
ECOL316407:JW5458-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized response regulatory protein YgeK
Gene namesi
Name:ygeK
Synonyms:ygeL
Ordered Locus Names:b2856, JW5458/JW2824
ORF Names:b2855
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13041. ygeK.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 210210Putative uncharacterized response regulatory protein YgeKPRO_0000081366Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4259232. 9 interactions.
4259233. 16 interactions.
STRINGi316407.85675670.

Structurei

3D structure databases

ProteinModelPortaliQ46791.
SMRiQ46791. Positions 4-205.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 122118Response regulatoryPROSITE-ProRule annotationAdd
BLAST
Domaini141 – 20666HTH luxR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH luxR-type DNA-binding domain.PROSITE-ProRule annotation
Contains 1 response regulatory domain.PROSITE-ProRule annotation

Phylogenomic databases

HOGENOMiHOG000034813.
InParanoidiQ46791.
OMAiDIASELC.
PhylomeDBiQ46791.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q46791-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKIKIVVSD QQPFMIDGII GFLGHYPDLY EVVGGYKDLK KAIAECNKST
60 70 80 90 100
AQIFILGEFA GGMMGAELVK WVKSHKIDAH IITFVAKMPY IDSIKLLEAG
110 120 130 140 150
AKGCVWKTSH PAKLNRAIDS ISNGYTYFDS VHMDCEKISS RYSSDNQLTN
160 170 180 190 200
RESEILQLIA DGKTNKEIAN FLQLSRKTVE THRLNIMKKL DVHSGIELIK
210
TALRMGVCTI
Length:210
Mass (Da):23,426
Last modified:January 31, 2002 - v2
Checksum:i840DB6364F0DBA97
GO

Sequence cautioni

The sequence AAA83037.1 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated
The sequence AAA83038.1 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated
The sequence BAE76923.1 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated
The sequence BAE76924.1 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated
The sequence U00096 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83037.1. Sequence problems.
U28375 Genomic DNA. Translation: AAA83038.1. Sequence problems.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76923.1. Sequence problems.
AP009048 Genomic DNA. Translation: BAE76924.1. Sequence problems.
PIRiA65069.
H65068.

Genome annotation databases

EnsemblBacteriaiBAE76923; BAE76923; BAE76923.
BAE76924; BAE76924; BAE76924.
KEGGiecj:JW2824.
ecj:JW5458.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA. Translation: AAA83037.1. Sequence problems.
U28375 Genomic DNA. Translation: AAA83038.1. Sequence problems.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAE76923.1. Sequence problems.
AP009048 Genomic DNA. Translation: BAE76924.1. Sequence problems.
PIRiA65069.
H65068.

3D structure databases

ProteinModelPortaliQ46791.
SMRiQ46791. Positions 4-205.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259232. 9 interactions.
4259233. 16 interactions.
STRINGi316407.85675670.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAE76923; BAE76923; BAE76923.
BAE76924; BAE76924; BAE76924.
KEGGiecj:JW2824.
ecj:JW5458.

Organism-specific databases

EchoBASEiEB2856.
EcoGeneiEG13041. ygeK.

Phylogenomic databases

HOGENOMiHOG000034813.
InParanoidiQ46791.
OMAiDIASELC.
PhylomeDBiQ46791.

Enzyme and pathway databases

BioCyciEcoCyc:G7475-MONOMER.
EcoCyc:G7476-MONOMER.
ECOL316407:JW2824-MONOMER.
ECOL316407:JW5458-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR000792. Tscrpt_reg_LuxR_C.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSiPR00038. HTHLUXR.
SMARTiSM00421. HTH_LUXR. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
PROSITEiPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYGEK_ECOLI
AccessioniPrimary (citable) accession number: Q46791
Secondary accession number(s): Q2M9Y2, Q2M9Y3, Q46792
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: January 31, 2002
Last modified: January 20, 2016
This is version 116 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.