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Protein

Putative uncharacterized response regulatory protein YgeK

Gene

ygeK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein uncertaini

Functioni

Caution

Could be the product of a pseudogene.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi165 – 184H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7475-MONOMER
EcoCyc:G7476-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized response regulatory protein YgeK
Gene namesi
Name:ygeK
Synonyms:ygeL
Ordered Locus Names:b2856, JW5458/JW2824
ORF Names:b2855
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13041 ygeK

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000813661 – 210Putative uncharacterized response regulatory protein YgeKAdd BLAST210

Proteomic databases

PRIDEiQ46791

Interactioni

Protein-protein interaction databases

BioGridi4259232, 9 interactors
4259233, 16 interactors
STRINGi316385.ECDH10B_3028

Structurei

3D structure databases

ProteinModelPortaliQ46791
SMRiQ46791
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 122Response regulatoryPROSITE-ProRule annotationAdd BLAST118
Domaini141 – 206HTH luxR-typePROSITE-ProRule annotationAdd BLAST66

Phylogenomic databases

HOGENOMiHOG000034813
InParanoidiQ46791
OMAiDIASELC
PhylomeDBiQ46791

Family and domain databases

CDDicd06170 LuxR_C_like, 1 hit
InterProiView protein in InterPro
IPR011006 CheY-like_superfamily
IPR016032 Sig_transdc_resp-reg_C-effctor
IPR001789 Sig_transdc_resp-reg_receiver
IPR000792 Tscrpt_reg_LuxR_C
PfamiView protein in Pfam
PF00196 GerE, 1 hit
PF00072 Response_reg, 1 hit
PRINTSiPR00038 HTHLUXR
SMARTiView protein in SMART
SM00421 HTH_LUXR, 1 hit
SUPFAMiSSF46894 SSF46894, 1 hit
SSF52172 SSF52172, 1 hit
PROSITEiView protein in PROSITE
PS00622 HTH_LUXR_1, 1 hit
PS50043 HTH_LUXR_2, 1 hit
PS50110 RESPONSE_REGULATORY, 1 hit

Sequencei

Sequence statusi: Complete.

Q46791-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKIKIVVSD QQPFMIDGII GFLGHYPDLY EVVGGYKDLK KAIAECNKST
60 70 80 90 100
AQIFILGEFA GGMMGAELVK WVKSHKIDAH IITFVAKMPY IDSIKLLEAG
110 120 130 140 150
AKGCVWKTSH PAKLNRAIDS ISNGYTYFDS VHMDCEKISS RYSSDNQLTN
160 170 180 190 200
RESEILQLIA DGKTNKEIAN FLQLSRKTVE THRLNIMKKL DVHSGIELIK
210
TALRMGVCTI
Length:210
Mass (Da):23,426
Last modified:January 31, 2002 - v2
Checksum:i840DB6364F0DBA97
GO

Sequence cautioni

The sequence AAA83037 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated
The sequence AAA83038 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated
The sequence BAE76923 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated
The sequence BAE76924 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated
The sequence U00096 differs from that shown. Reason: Erroneous termination at position 52. Translated as Gln.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U28375 Genomic DNA Translation: AAA83037.1 Sequence problems.
U28375 Genomic DNA Translation: AAA83038.1 Sequence problems.
U00096 Genomic DNA No translation available.
AP009048 Genomic DNA Translation: BAE76923.1 Sequence problems.
AP009048 Genomic DNA Translation: BAE76924.1 Sequence problems.
PIRiA65069
H65068

Genome annotation databases

EnsemblBacteriaiBAE76923; BAE76923; BAE76923
BAE76924; BAE76924; BAE76924
KEGGiecj:JW2824
ecj:JW5458

Similar proteinsi

Entry informationi

Entry nameiYGEK_ECOLI
AccessioniPrimary (citable) accession number: Q46791
Secondary accession number(s): Q2M9Y2, Q2M9Y3, Q46792
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: January 31, 2002
Last modified: March 28, 2018
This is version 125 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health