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Q46705 (Q46705_ECOLX) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 46. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:traF EMBL AAA86459.1
Encoded onPlasmid pKM101 Ref.1 Ref.2 EMBL AAA86459.1
OrganismEscherichia coli EMBL AAA86459.1
Taxonomic identifier562 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length386 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 3JQO PDB 3ZBI
Plasmid EMBL AAA86459.1
Gene Ontology (GO)
   Molecular_functionprotein binding

Inferred from physical interaction Ref.4. Source: IntAct

Complete GO annotation...

Binary interactions

With

Entry

#Exp.

IntAct

Notes

traOQ467043EBI-8793037,EBI-8793050

Sequences

Sequence LengthMass (Da)Tools
Q46705 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 3F94CFD32ED8316B

FASTA38640,747
        10         20         30         40         50         60 
MARKSVDVDQ ELDENTGDGE FESERGGFNG SNRRSAPRMK AFVILMALLA LVFIGITVMG 

        70         80         90        100        110        120 
KIRAPAKAEA DKDGGKAQQA NTLPNYSFNS DPDVNKPATA QNSPTDARAV QAAAQADADA 

       130        140        150        160        170        180 
GSSNTGARTS NKRKEPSPEE LAMQRRLGGE LAQTNQAATS NSPGAQPQDN ETSEGSSALA 

       190        200        210        220        230        240 
KNLTPARLKA SRAGVMANPS LTVPKGKMIP CGTGTELDTT VPGQVSCRVS QDVYSADGLV 

       250        260        270        280        290        300 
RLIDKGSWVD GQITGGIKDG QARVFVLWER IRNDQDGTIV NIDSAGTNSL GSAGIPGQVD 

       310        320        330        340        350        360 
AHMWERLAGA IMISLFSDTL TALVNQTQSN NIQYNSTENS GGQLASEALR SYMSIPPTLY 

       370        380 
DQQGDAVSIF VARDLDFSGV YTLADN 

« Hide

References

[1]"Common ancestry between IncN conjugal transfer genes and macromolecular export systems of plant and animal pathogens."
Pohlman R.F., Genetti H.D., Winans S.C.
Mol. Microbiol. 14:655-668(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[2]"Entry exclusion of the IncN plasmid pKM101 is mediated by a single hydrophilic protein containing a lipid attachment motif."
Pohlman R.F., Genetti H.D., Winans S.C.
Plasmid 31:158-165(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[3]"Structure of the outer membrane complex of a type IV secretion system."
Chandran V., Fronzes R., Duquerroy S., Cronin N., Navaza J., Waksman G.
Nature 462:1011-1015(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 160-386.
[4]"Structure of a bacterial type IV secretion core complex at subnanometre resolution."
Rivera-Calzada A., Fronzes R., Savva C.G., Chandran V., Lian P.W., Laeremans T., Pardon E., Steyaert J., Remaut H., Waksman G., Orlova E.V.
EMBO J. 32:1195-1204(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE BY ELECTRON MICROSCOPY (8.50 ANGSTROMS) OF 171-386.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U09868 Genomic DNA. Translation: AAA86459.1.
PIRI79274.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3JQOX-ray2.60A/D/G/J/M/P/S/V/Y/b/e/h/k/n160-386[»]
3ZBIelectron microscopy8.50A/D/G/J/M/P/S/V/Y/b/e/h/k/n171-386[»]
ProteinModelPortalQ46705.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-59306N.
IntActQ46705. 2 interactions.

Protein family/group databases

TCDB3.A.7.6.1. the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR005498. T4SS_VirB10/TraB/TrbI.
[Graphical view]
PfamPF03743. TrbI. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ46705.

Entry information

Entry nameQ46705_ECOLX
AccessionPrimary (citable) accession number: Q46705
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 11, 2014
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)