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Q46705

- Q46705_ECOLX

UniProt

Q46705 - Q46705_ECOLX

Protein
Submitted name:

TraF protein

Gene

traF

Organism
Escherichia coli
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 47 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. protein binding Source: IntAct

    Protein family/group databases

    TCDBi3.A.7.6.1. the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    TraF proteinImported
    Gene namesi
    Name:traFImported
    Encoded oniPlasmid pKM101Imported
    OrganismiEscherichia coliImported
    Taxonomic identifieri562 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

    Interactioni

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    traOQ467043EBI-8793037,EBI-8793050

    Protein-protein interaction databases

    DIPiDIP-59306N.
    IntActiQ46705. 2 interactions.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3JQOX-ray2.60A/D/G/J/M/P/S/V/Y/b/e/h/k/n160-386[»]
    3ZBIelectron microscopy8.50A/D/G/J/M/P/S/V/Y/b/e/h/k/n171-386[»]
    ProteinModelPortaliQ46705.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ46705.

    Family & Domainsi

    Family and domain databases

    InterProiIPR005498. T4SS_VirB10/TraB/TrbI.
    [Graphical view]
    PfamiPF03743. TrbI. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q46705-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARKSVDVDQ ELDENTGDGE FESERGGFNG SNRRSAPRMK AFVILMALLA    50
    LVFIGITVMG KIRAPAKAEA DKDGGKAQQA NTLPNYSFNS DPDVNKPATA 100
    QNSPTDARAV QAAAQADADA GSSNTGARTS NKRKEPSPEE LAMQRRLGGE 150
    LAQTNQAATS NSPGAQPQDN ETSEGSSALA KNLTPARLKA SRAGVMANPS 200
    LTVPKGKMIP CGTGTELDTT VPGQVSCRVS QDVYSADGLV RLIDKGSWVD 250
    GQITGGIKDG QARVFVLWER IRNDQDGTIV NIDSAGTNSL GSAGIPGQVD 300
    AHMWERLAGA IMISLFSDTL TALVNQTQSN NIQYNSTENS GGQLASEALR 350
    SYMSIPPTLY DQQGDAVSIF VARDLDFSGV YTLADN 386
    Length:386
    Mass (Da):40,747
    Last modified:November 1, 1996 - v1
    Checksum:i3F94CFD32ED8316B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U09868 Genomic DNA. Translation: AAA86459.1.
    PIRiI79274.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U09868 Genomic DNA. Translation: AAA86459.1 .
    PIRi I79274.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3JQO X-ray 2.60 A/D/G/J/M/P/S/V/Y/b/e/h/k/n 160-386 [» ]
    3ZBI electron microscopy 8.50 A/D/G/J/M/P/S/V/Y/b/e/h/k/n 171-386 [» ]
    ProteinModelPortali Q46705.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-59306N.
    IntActi Q46705. 2 interactions.

    Protein family/group databases

    TCDBi 3.A.7.6.1. the type iv (conjugal dna-protein transfer or virb) secretory pathway (ivsp) family.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Miscellaneous databases

    EvolutionaryTracei Q46705.

    Family and domain databases

    InterProi IPR005498. T4SS_VirB10/TraB/TrbI.
    [Graphical view ]
    Pfami PF03743. TrbI. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Common ancestry between IncN conjugal transfer genes and macromolecular export systems of plant and animal pathogens."
      Pohlman R.F., Genetti H.D., Winans S.C.
      Mol. Microbiol. 14:655-668(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Plasmid: pKM101
    2. "Entry exclusion of the IncN plasmid pKM101 is mediated by a single hydrophilic protein containing a lipid attachment motif."
      Pohlman R.F., Genetti H.D., Winans S.C.
      Plasmid 31:158-165(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Plasmid: pKM101
    3. "Structure of the outer membrane complex of a type IV secretion system."
      Chandran V., Fronzes R., Duquerroy S., Cronin N., Navaza J., Waksman G.
      Nature 462:1011-1015(2009) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS) OF 160-386.
    4. "Structure of a bacterial type IV secretion core complex at subnanometre resolution."
      Rivera-Calzada A., Fronzes R., Savva C.G., Chandran V., Lian P.W., Laeremans T., Pardon E., Steyaert J., Remaut H., Waksman G., Orlova E.V.
      EMBO J. 32:1195-1204(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: STRUCTURE BY ELECTRON MICROSCOPY (8.50 ANGSTROMS) OF 171-386.

    Entry informationi

    Entry nameiQ46705_ECOLX
    AccessioniPrimary (citable) accession number: Q46705
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 1, 1996
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 47 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, PlasmidImported

    External Data

    Dasty 3