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Protein

30S ribosomal protein S8e

Gene

rps8e

Organism
Methanosarcina barkeri (strain Fusaro / DSM 804)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciMBAR269797:GHUW-3521-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S8eUniRule annotation
Gene namesi
Name:rps8eUniRule annotation
Ordered Locus Names:Mbar_A3465
OrganismiMethanosarcina barkeri (strain Fusaro / DSM 804)
Taxonomic identifieri269797 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosarcina
Proteomesi
  • UP000008156 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12512530S ribosomal protein S8ePRO_0000304174Add
BLAST

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi269797.Mbar_A3465.

Structurei

3D structure databases

ProteinModelPortaliQ465V4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S8e family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04154. Archaea.
COG2007. LUCA.
HOGENOMiHOG000108969.
KOiK02995.
OMAiNPNYVRR.

Family and domain databases

HAMAPiMF_00029. Ribosomal_S8e.
InterProiIPR020919. Ribosomal_protein_S8e_arc.
IPR001047. Ribosomal_S8e.
IPR022309. Ribosomal_S8e/biogenesis_NSA2.
IPR018283. Ribosomal_S8e_CS.
[Graphical view]
PANTHERiPTHR10394. PTHR10394. 1 hit.
PfamiPF01201. Ribosomal_S8e. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00307. eS8. 1 hit.
PROSITEiPS01193. RIBOSOMAL_S8E. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q465V4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRWQGSSRRK VTGGKVINAR GKRKFEMGRE SAETRISEIK RKNVHTMGGN
60 70 80 90 100
RKVRLLQCDV ANITNPKDGK TTSAPIETVL DNIANKHYIR RNILTKGSVI
110 120
RTPLGTAKVT SRPGQDGVVN AVLIE
Length:125
Mass (Da):13,850
Last modified:September 13, 2005 - v1
Checksum:i6CD619C5CBE122B2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000099 Genomic DNA. Translation: AAZ72338.1.
RefSeqiWP_011308377.1. NC_007355.1.

Genome annotation databases

EnsemblBacteriaiAAZ72338; AAZ72338; Mbar_A3465.
GeneIDi3626438.
KEGGimba:Mbar_A3465.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000099 Genomic DNA. Translation: AAZ72338.1.
RefSeqiWP_011308377.1. NC_007355.1.

3D structure databases

ProteinModelPortaliQ465V4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi269797.Mbar_A3465.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAZ72338; AAZ72338; Mbar_A3465.
GeneIDi3626438.
KEGGimba:Mbar_A3465.

Phylogenomic databases

eggNOGiarCOG04154. Archaea.
COG2007. LUCA.
HOGENOMiHOG000108969.
KOiK02995.
OMAiNPNYVRR.

Enzyme and pathway databases

BioCyciMBAR269797:GHUW-3521-MONOMER.

Family and domain databases

HAMAPiMF_00029. Ribosomal_S8e.
InterProiIPR020919. Ribosomal_protein_S8e_arc.
IPR001047. Ribosomal_S8e.
IPR022309. Ribosomal_S8e/biogenesis_NSA2.
IPR018283. Ribosomal_S8e_CS.
[Graphical view]
PANTHERiPTHR10394. PTHR10394. 1 hit.
PfamiPF01201. Ribosomal_S8e. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00307. eS8. 1 hit.
PROSITEiPS01193. RIBOSOMAL_S8E. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes."
    Maeder D.L., Anderson I., Brettin T.S., Bruce D.C., Gilna P., Han C.S., Lapidus A., Metcalf W.W., Saunders E., Tapia R., Sowers K.R.
    J. Bacteriol. 188:7922-7931(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Fusaro / DSM 804.

Entry informationi

Entry nameiRS8E_METBF
AccessioniPrimary (citable) accession number: Q465V4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 11, 2007
Last sequence update: September 13, 2005
Last modified: November 11, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.