Unreviewed, UniProtKB/TrEMBL Q460M5 (Q460M5_RAT)

Names and origin

Protein names

Submitted name:
    SALM1 EMBL AAZ20638.1

Gene names

Name:

Lrfn2 RGD 1311831

Organism

Rattus norvegicus (Rat) EMBL AAZ20638.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	788 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Domain	Immunoglobulin domain Spearmint SPM003591 Leucine-rich repeat Spearmint SPM003591 Repeat Spearmint SPM003591
Gene Ontology (GO)
Molecular function	protein binding Ref.1 Inferred from physical interaction. Source: IntAct
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
Dlg1	Q62696	1	EBI-877185,EBI-389325
Dlg3	Q62936	1	EBI-877185,EBI-349596
Dlg4	P31016	1	EBI-877185,EBI-375655
Grin1	P35439	1	EBI-877185,EBI-877897
Grin2a	Q8CGM3	1	EBI-877185,EBI-877440
Grin2b	Q00960	1	EBI-877185,EBI-396905

Sequences

	Sequence		Length	Mass (Da)
	Q460M5-1 [UniParc]. Last modified September 13, 2005. Version 1. Checksum: 1C0837EAFF3F36EC	FASTA	788	84,917
	10 20 30 40 50 60 METLLGGLLA FGMAFAVVDA CPKYCVCQNL SESLGTLCPS KGLLFVPPDI DRRTVELRLG 70 80 90 100 110 120 GNFIIHIGRQ DFANMTGLVD LTLSRNTISH IQPFSFLDLE SLRSLHLDSN RLPSLGEDTL 130 140 150 160 170 180 RGLVNLQHLI VNNNQLGGIA DDAFEDFLLT LEDLDLSYNN LHGLPWDSVR RMVNLHQLSL 190 200 210 220 230 240 DHNLLDHIAE GTFADLQKLA RLDLTSNRLQ KLPPDPIFAR SQASLLTATP FAPPLSFSFG 250 260 270 280 290 300 GNPLHCNCEL LWLRRLERDD DLKTCGSPGG LKGRYFWHIR EEEFVCEPPL ITQHTHKLLV 310 320 330 340 350 360 LEGQAATLKC KAIGDPSPLI HWVAPDDRLV GNSSRTAVYD NGTLDILITT SQDSGPFTCI 370 380 390 400 410 420 AANAAGEATA TVEVSIVQLP HLSNSTSRMA PPKSRLSDIT GSSKTSRGGG GSGAGEPPKS 430 440 450 460 470 480 TPERAVLVSD VTTTSALVKW SVSKSAPRVK MYQLQYNCSD DEVLIYRMIP ASNKAFVVNN 490 500 510 520 530 540 LVSGTGYDLC VLAMWDDTAT TLTATNIVGC AQFFTKADYP QCQSMHSQIL GGTMILVIGG 550 560 570 580 590 600 IIVATLLVFI VILMVRYKVC NHDAPGKMAA ATVSNVYSQT NGAQPPPLGG MPVGQLPQAP 610 620 630 640 650 660 PKVVVRNELM DFSTSLARAC DSSSSSSLGS GEAAGLSRGP WRLPPPAPRP KPSLDRLMGA 670 680 690 700 710 720 FASLDLKSQR KEELLDSRTP AGRGAGTSAR GHHSDREPLL GPPATRARSL LPLPLEGKAK 730 740 750 760 770 780 RSHSFDMGDF AAAAAAAPGG YSPPRRVSNI WTKRSLSVNG MLLPFEENDL VGARGTFGSS EWVMESTV

References

[1]	"A novel family of adhesion-like molecules that interacts with the NMDA receptor." Wang C.Y., Chang K., Petralia R.S., Wang Y.X., Seabold G.K., Wenthold R.J. J. Neurosci. 26:2174-2183(2006) [PubMed: 16495444] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAZ20638.1.
[2]	"Synaptic Adhesion-Like Molecules, a Novel Family of Proteins Interacting with NMDA Receptor and MAGUKs." Wang C.-Y., Wenthold R.J. Submitted (MAY-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: Sprague-Dawley EMBL AAZ20638.1.

Cross-references

Sequence databases
EMBLGenBankDDBJ	DQ070869 mRNA. Translation: AAZ20638.1.
UniGene	Rn.47365
3D structure databases
ModBase	Search...
Protein-protein interaction databases
IntAct	Q460M5. 6 interactions.
Genome annotation databases
Ensembl	ENSRNOG00000011803. Rattus norvegicus. [Contig view]
Organism-specific databases
RGD	1311831. Lrfn2.
Phylogenomic databases
HOVERGEN	Q460M5.
Gene expression databases
ArrayExpress	Q460M5.
Family and domain databases
InterPro	IPR008957. Fibronectin_typ-III-like_fold. IPR003961. FN_III. IPR007110. Ig-like. IPR013783. Ig-like_fold. IPR013098. Ig_I-set. IPR003598. Ig_sub2. IPR001611. Leu-rich_rpt. IPR000372. Leu-rich_rpt_Cys-rich-reg_N. IPR003591. Leu-rich_rpt_typical-subtyp. IPR000483. LRR_C. [Graphical view]
Gene3D	G3DSA:2.60.40.30. FN_III-like. 1 hit. G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
Pfam	PF00041. fn3. 1 hit. PF07679. I-set. 1 hit. PF00560. LRR_1. 6 hits. [Graphical view]
PRINTS	PR00019. LEURICHRPT.
SMART	SM00060. FN3. 1 hit. SM00408. IGc2. 1 hit. SM00369. LRR_TYP. 3 hits. SM00082. LRRCT. 1 hit. SM00013. LRRNT. 1 hit. [Graphical view]
PROSITE	PS50853. FN3. 1 hit. PS50835. IG_LIKE. 1 hit. [Graphical view]

Entry information

Entry name

Q460M5_RAT

Accession

Primary (citable) accession number: Q460M5

Entry history

Integrated into UniProtKB/TrEMBL:	September 13, 2005
Last sequence update:	September 13, 2005
Last modified:	December 16, 2008
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)