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Q46085

- Q46085_CLOHI

UniProt

Q46085 - Q46085_CLOHI

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Protein
Submitted name:

ColH protein

Gene
colH
Organism
Clostridium histolyticum
Status
Unreviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi421 – 4211ZincImported
Metal bindingi430 – 4301Calcium 1Imported
Metal bindingi455 – 4551Zinc; via tele nitrogenImported
Metal bindingi459 – 4591Zinc; via tele nitrogenImported
Metal bindingi463 – 4631Calcium 1; via carbonyl oxygenImported
Metal bindingi467 – 4671Calcium 1; via carbonyl oxygenImported
Metal bindingi469 – 4691Calcium 1; via carbonyl oxygenImported
Metal bindingi487 – 4871ZincImported
Metal bindingi814 – 8141Calcium 2Imported
Metal bindingi815 – 8151Calcium 2; via carbonyl oxygenImported
Metal bindingi842 – 8421Calcium 2Imported
Metal bindingi844 – 8441Calcium 2Imported
Metal bindingi884 – 8841Calcium 2Imported
Metal bindingi908 – 9081Cadmium
Metal bindingi908 – 9081Calcium 3Imported
Metal bindingi910 – 9101Cadmium
Metal bindingi910 – 9101Calcium 3Imported
Metal bindingi910 – 9101Calcium 4Imported
Metal bindingi912 – 9121Calcium 4Imported
Metal bindingi913 – 9131Calcium 4Imported
Metal bindingi931 – 9311Cadmium; via carbonyl oxygen
Metal bindingi931 – 9311Calcium 3; via carbonyl oxygenImported
Metal bindingi937 – 9371Cadmium
Metal bindingi937 – 9371Calcium 3Imported
Metal bindingi937 – 9371Calcium 4Imported
Metal bindingi938 – 9381Calcium 4; via carbonyl oxygenImported
Metal bindingi939 – 9391Cadmium
Metal bindingi939 – 9391Calcium 3Imported
Metal bindingi939 – 9391Calcium 4Imported

GO - Molecular functioni

  1. serine-type endopeptidase activity Source: InterPro
  2. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

CadmiumImported, CalciumImported, Metal-bindingImported, ZincImported

Protein family/group databases

MEROPSiM09.003.

Names & Taxonomyi

Protein namesi
Submitted name:
ColH proteinImported
Submitted name:
CollagenaseImported
Gene namesi
Name:colHImported
OrganismiClostridium histolyticumImported
Taxonomic identifieri1498 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium

Subcellular locationi

GO - Cellular componenti

  1. collagen trimer Source: UniProtKB-KW
  2. extracellular region Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 4040 PredictedImportedAdd
BLAST
Chaini41 – 1021981collagenaseImportedPRO_5000139769Add
BLAST

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3JQWX-ray2.00A/B/C902-1021[»]
3JQXX-ray2.20A/B/C902-1021[»]
4AR1X-ray2.01A331-721[»]
4ARFX-ray1.77A331-721[»]
4JGUX-ray1.42A/B806-900[»]

Miscellaneous databases

EvolutionaryTraceiQ46085.

Family & Domainsi

Keywords - Domaini

CollagenImported, SignalImported

Family and domain databases

Gene3Di2.60.40.670. 2 hits.
InterProiIPR008985. ConA-like_lec_gl_sf.
IPR007280. Peptidase_C_arc/bac.
IPR013661. Peptidase_M9_N_dom.
IPR002169. Peptidase_M9A/M9B.
IPR022409. PKD/Chitinase_dom.
IPR000601. PKD_dom.
[Graphical view]
PfamiPF01752. Peptidase_M9. 1 hit.
PF08453. Peptidase_M9_N. 1 hit.
PF00801. PKD. 2 hits.
PF04151. PPC. 1 hit.
[Graphical view]
PRINTSiPR00931. MICOLLPTASE.
SMARTiSM00089. PKD. 2 hits.
[Graphical view]
SUPFAMiSSF49299. SSF49299. 2 hits.
SSF49899. SSF49899. 1 hit.
PROSITEiPS50093. PKD. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q46085-1 [UniParc]FASTAAdd to Basket

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MKRKCLSKRL MLAITMATIF TVNSTLPIYA AVDKNNATAA VQNESKRYTV     50
SYLKTLNYYD LVDLLVKTEI ENLPDLFQYS SDAKEFYGNK TRMSFIMDEI 100
GRRAPQYTEI DHKGIPTLVE VVRAGFYLGF HNKELNEINK RSFKERVIPS 150
ILAIQKNPNF KLGTEVQDKI VSATGLLAGN ETAPPEVVNN FTPILQDCIK 200
NIDRYALDDL KSKALFNVLA APTYDITEYL RATKEKPENT PWYGKIDGFI 250
NELKKLALYG KINDNNSWII DNGIYHIAPL GKLHSNNKIG IETLTEVMKV 300
YPYLSMQHLQ SADQIKRHYD SKDAEGNKIP LDKFKKEGKE KYCPKTYTFD 350
DGKVIIKAGA RVEEEKVKRL YWASKEVNSQ FFRVYGIDKP LEEGNPDDIL 400
TMVIYNSPEE YKLNSVLYGY DTNNGGMYIE PEGTFFTYER EAQESTYTLE 450
ELFRHEYTHY LQGRYAVPGQ WGRTKLYDND RLTWYEEGGA ELFAGSTRTS 500
GILPRKSIVS NIHNTTRNNR YKLSDTVHSK YGASFEFYNY ACMFMDYMYN 550
KDMGILNKLN DLAKNNDVDG YDNYIRDLSS NYALNDKYQD HMQERIDNYE 600
NLTVPFVADD YLVRHAYKNP NEIYSEISEV AKLKDAKSEV KKSQYFSTFT 650
LRGSYTGGAS KGKLEDQKAM NKFIDDSLKK LDTYSWSGYK TLTAYFTNYK 700
VDSSNRVTYD VVFHGYLPNE GDSKNSLPYG KINGTYKGTE KEKIKFSSEG 750
SFDPDGKIVS YEWDFGDGNK SNEENPEHSY DKVGTYTVKL KVTDDKGESS 800
VSTTTAEIKD LSENKLPVIY MHVPKSGALN QKVVFYGKGT YDPDGSIAGY 850
QWDFGDGSDF SSEQNPSHVY TKKGEYTVTL RVMDSSGQMS EKTMKIKITD 900
PVYPIGTEKE PNNSKETASG PIVPGIPVSG TIENTSDQDY FYFDVITPGE 950
VKIDINKLGY GGATWVVYDE NNNAVSYATD DGQNLSGKFK ADKPGRYYIH 1000
LYMFNGSYMP YRINIEGSVG R 1021
Length:1,021
Mass (Da):116,377
Last modified:November 1, 1996 - v1
Checksum:i826F45EFD96F917C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D29981 Genomic DNA. Translation: BAA06251.1.
AB014075 Genomic DNA. Translation: BAA34542.1.
PIRiI40805.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
D29981 Genomic DNA. Translation: BAA06251.1 .
AB014075 Genomic DNA. Translation: BAA34542.1 .
PIRi I40805.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3JQW X-ray 2.00 A/B/C 902-1021 [» ]
3JQX X-ray 2.20 A/B/C 902-1021 [» ]
4AR1 X-ray 2.01 A 331-721 [» ]
4ARF X-ray 1.77 A 331-721 [» ]
4JGU X-ray 1.42 A/B 806-900 [» ]
ModBasei Search...
MobiDBi Search...

Protein family/group databases

MEROPSi M09.003.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Miscellaneous databases

EvolutionaryTracei Q46085.

Family and domain databases

Gene3Di 2.60.40.670. 2 hits.
InterProi IPR008985. ConA-like_lec_gl_sf.
IPR007280. Peptidase_C_arc/bac.
IPR013661. Peptidase_M9_N_dom.
IPR002169. Peptidase_M9A/M9B.
IPR022409. PKD/Chitinase_dom.
IPR000601. PKD_dom.
[Graphical view ]
Pfami PF01752. Peptidase_M9. 1 hit.
PF08453. Peptidase_M9_N. 1 hit.
PF00801. PKD. 2 hits.
PF04151. PPC. 1 hit.
[Graphical view ]
PRINTSi PR00931. MICOLLPTASE.
SMARTi SM00089. PKD. 2 hits.
[Graphical view ]
SUPFAMi SSF49299. SSF49299. 2 hits.
SSF49899. SSF49899. 1 hit.
PROSITEi PS50093. PKD. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Cloning and nucleotide sequence analysis of the colH gene from Clostridium histolyticum encoding a collagenase and a gelatinase."
    Yoshihara K., Matsushita O., Minami J., Okabe A.
    J. Bacteriol. 176:6489-6496(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: JCM 1403Imported.
  2. "Gene duplication and multiplicity of collagenases in Clostridium histolyticum."
    Matsushita O., Jung C.-M., Katayama S., Minami J., Takahashi Y., Okabe A.
    J. Bacteriol. 181:923-933(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: JCM 1403Imported.
  3. "Structural comparison of ColH and ColG collagen-binding domains from Clostridium histolyticum."
    Bauer R., Wilson J.J., Philominathan S.T., Davis D., Matsushita O., Sakon J.
    J. Bacteriol. 195:318-327(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 902-1021 IN COMPLEX WITH CADMIUM AND CALCIUM.
  4. "Structural basis for activity regulation and substrate preference of clostridial collagenases G, H, and T."
    Eckhard U., Schonauer E., Brandstetter H.
    J. Biol. Chem. 288:20184-20194(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.77 ANGSTROMS) OF 331-721 IN COMPLEX WITH CALCIUM AND ZINC.
  5. "Crystal structure of Clostridium histolyticum colH collagenase polycystic kidney disease-like domain 2b at 1.4 Angstrom resolution in presence of calcium."
    Bauer R., Matsushita O., Sakon J.
    Submitted (MAR-2013) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.42 ANGSTROMS) OF 806-900 IN COMPLEX WITH CALCIUM.

Entry informationi

Entry nameiQ46085_CLOHI
AccessioniPrimary (citable) accession number: Q46085
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 9, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported

External Data

Dasty 3