Unreviewed, UniProtKB/TrEMBL Q46080 (Q46080_PEDHE)

Names and origin

Protein names

Submitted name:
    Heparinase II protein EMBL AAB18277.1

Gene names

Name:

HepB EMBL AAB18277.1

Organism

Pedobacter heparinus (Flavobacterium heparinum) EMBL AAB18277.1

Taxonomic identifier

984 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Sphingobacteria › Sphingobacteriales › Sphingobacteriaceae › Pedobacter

Protein attributes

Sequence length	772 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Domain	Signal
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 25	25	Potential EMBL AAB18277.1
	Chain	26 – 772	747	Potential EMBL AAB18277.1		PRO_5000144613

Sequences

	Sequence		Length	Mass (Da)
	Q46080-1 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: 66D9752035420E8C	FASTA	772	87,652
	10 20 30 40 50 60 MKRQLYLYVI FVVVELMVFT TKGYSQTKAD VVWKDVDGVS MPIPPKTHPR LYLREQQVPD 70 80 90 100 110 120 LKNRMNDPKL KKVWADMIKM QEDWKPADIP EVKDFRFYFN QKGLTVRVEL MALNYLMTKD 130 140 150 160 170 180 PKVGREAITS IIDTLETATF KPAGDISRGI GLFMVTGAIV YDWCYDQLKP EEKTRFVKAF 190 200 210 220 230 240 VRLAKMLECG YPPVKDKSIV GHASEWMIMR DLLSVGIAIY DEFPEMYNLA AGRFFKEHLV 250 260 270 280 290 300 ARNWFYPSHN YHQGMSYLNV RFTNDLFALW ILDRMGAGNV FNPGQQFILY DAIYKRRPDG 310 320 330 340 350 360 QILAGGDVDY SRKKPKYYTM PALLAGSYYK DEYLNYEFLK DPNVEPHCKL FEFLWRDTQL 370 380 390 400 410 420 GSRKPDDLPL SRYSGSPFGW MIARTGWGPE SVIAEMKVNE YSFLNHQHQD AGAFQIYYKG 430 440 450 460 470 480 PLAIDAGSYT GSSGGYNSPH NKNFFKRTIA HNSLLIYDPK ETFSSSGYGG SDHTDFAAND 490 500 510 520 530 540 GGQRLPGKGW IAPRDLKEML AGDFRTGKIL AQGFGPDNQT PDYTYLKGDI TAAYSAKVKE 550 560 570 580 590 600 VKRSFLFLNL KDAKVPAAMI VFDKVVASNP DFKKFWLLHS IEQPEIKGNQ ITIKRTKNGD 610 620 630 640 650 660 SGMLVNTALL PDAANSNITS IGGKGKDFWV FGTNYTNDPK PGTDEALERG EWRVEITPKK 670 680 690 700 710 720 AAAEDYYLNV IQIADNTQQK LHEVKRIDGD KVVGVQLADR IVTFSKTSET VDRPFGFSVV 730 740 750 760 770 GKGTFKFVMT DLLPGTWQVL KDGKILYPAL SAKGDDGPLY FEGTEGTYRF LR

References

[1]	"Isolation and expression in Escherichia coli of hepB and hepC, genes coding for the glycosaminoglycan-degrading enzymes heparinase II and heparinase III, respectively, from Flavobacterium heparinum." Su H., Blain F., Musil R.A., Zimmermann J.J., Gu K., Bennett D.C. Appl. Environ. Microbiol. 62:2723-2734(1996) [PubMed: 8702264] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	Tkalec A.L. Submitted (MAY-1995) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
+	Additional computationally mapped references.

Cross-references

Sequence databases

EMBLGenBankDDBJ

U27585 Genomic DNA. Translation: AAB18277.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2FUQ	X-ray	2.15	A/B	27-772	[»]
2FUT	X-ray	2.30	A/B	25-772	[»]
3E7J	X-ray	2.10	A/B	24-772	[»]
3E80	X-ray	2.35	A/B/C	24-772	[»]

ModBase

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Protein family/group databases

CAZy

PL21. Polysaccharide Lyase Family 21.

Family and domain databases

InterPro

IPR012480. Hepar_II_III.
[Graphical view]

Pfam

PF07940. Hepar_II_III. 1 hit.
[Graphical view]

ProtoNet

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Entry information

Entry name

Q46080_PEDHE

Accession

Primary (citable) accession number: Q46080

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	June 16, 2009
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)