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Q45FX5

- VAV_CAEEL

UniProt

Q45FX5 - VAV_CAEEL

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Protein

Protein vav-1

Gene
vav-1, C35B8.2
Organism
Caenorhabditis elegans
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Acts as guanine nucleotide exchange factor (GEF) for Rho GTPase. Has a critical roles in the generation of rhythmic behaviors: feeding, defecation and ovulation by dynamically regulating the concentration of intracellular calcium.1 Publication

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri610 – 66455Phorbol-ester/DAG-typeAdd
BLAST

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. Rho guanyl-nucleotide exchange factor activity Source: InterPro

GO - Biological processi

  1. intracellular signal transduction Source: InterPro
  2. negative regulation of Notch signaling pathway Source: WormBase
  3. regulation of vulval development Source: WormBase
Complete GO annotation...

Keywords - Molecular functioni

Guanine-nucleotide releasing factor

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

SignaLinkiQ45FX5.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein vav-1
Gene namesi
Name:vav-1
ORF Names:C35B8.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940: Chromosome X

Organism-specific databases

WormBaseiC35B8.2a; CE38040; WBGene00006887; vav-1.
C35B8.2b; CE39333; WBGene00006887; vav-1.

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Mutagenesisi183 – 1831Y → F: Leads to a dominant hypercontracted and uncoordinated phenotype; when associated with Y-200 and Y-217. 1 Publication
Mutagenesisi200 – 2001Y → F: Leads to a dominant hypercontracted and uncoordinated phenotype; when associated with Y-183 and Y-217. 1 Publication
Mutagenesisi217 – 2171Y → F: Leads to a dominant hypercontracted and uncoordinated phenotype. Leads to a dominant hypercontracted and uncoordinated phenotype; when associated with Y-183 and Y-200. 1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10071007Protein vav-1PRO_0000238786Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei183 – 1831Phosphotyrosine By similarity
Modified residuei200 – 2001Phosphotyrosine By similarity
Modified residuei217 – 2171Phosphotyrosine By similarity

Post-translational modificationi

GEF activity is regulated by phosphorylation on tyrosine residues.

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ45FX5.

Expressioni

Tissue specificityi

Strong expression in the pharynx, proximal gonad, spermatheca, intestine and rectal epithelia.1 Publication

Interactioni

Protein-protein interaction databases

BioGridi46070. 6 interactions.
DIPiDIP-25959N.
IntActiQ45FX5. 27 interactions.
MINTiMINT-1070973.

Structurei

3D structure databases

ProteinModelPortaliQ45FX5.
SMRiQ45FX5. Positions 34-658, 801-990.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini37 – 150114CHAdd
BLAST
Domaini240 – 437198DHAdd
BLAST
Domaini470 – 598129PHAdd
BLAST
Domaini770 – 81344SH3 1Add
BLAST
Domaini831 – 92595SH2Add
BLAST
Domaini926 – 99166SH3 2Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni151 – 23989ACAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi803 – 8064Poly-Ser
Compositional biasi1004 – 10074Poly-Ser

Domaini

An acidic domain (AC) contains three highly conserved tyrosines that are involved in the autoinhibition of GEF activity By similarity.

Sequence similaritiesi

Contains 1 PH domain.
Contains 1 SH2 domain.
Contains 2 SH3 domains.

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri610 – 66455Phorbol-ester/DAG-typeAdd
BLAST

Keywords - Domaini

Repeat, SH2 domain, SH3 domain, Zinc-finger

Phylogenomic databases

eggNOGiCOG5422.
GeneTreeiENSGT00740000115307.
HOGENOMiHOG000020846.
InParanoidiQ45FX5.
KOiK05730.
OMAiVELVQYY.
OrthoDBiEOG78SQH7.
PhylomeDBiQ45FX5.

Family and domain databases

Gene3Di1.10.418.10. 1 hit.
1.20.900.10. 1 hit.
2.30.29.30. 1 hit.
3.30.505.10. 1 hit.
InterProiIPR001715. CH-domain.
IPR000219. DH-domain.
IPR001331. GDS_CDC24_CS.
IPR001849. PH_domain.
IPR011993. PH_like_dom.
IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
IPR000980. SH2.
IPR011511. SH3_2.
IPR001452. SH3_domain.
IPR013315. Spectrin_alpha_SH3.
[Graphical view]
PfamiPF00130. C1_1. 1 hit.
PF00307. CH. 1 hit.
PF00169. PH. 1 hit.
PF00621. RhoGEF. 1 hit.
PF00017. SH2. 1 hit.
PF07653. SH3_2. 1 hit.
[Graphical view]
PRINTSiPR00401. SH2DOMAIN.
PR00452. SH3DOMAIN.
PR01887. SPECTRNALPHA.
SMARTiSM00109. C1. 1 hit.
SM00033. CH. 1 hit.
SM00233. PH. 1 hit.
SM00325. RhoGEF. 1 hit.
SM00252. SH2. 1 hit.
SM00326. SH3. 1 hit.
[Graphical view]
SUPFAMiSSF47576. SSF47576. 1 hit.
SSF48065. SSF48065. 1 hit.
SSF50044. SSF50044. 2 hits.
SSF55550. SSF55550. 1 hit.
PROSITEiPS50021. CH. 1 hit.
PS00741. DH_1. 1 hit.
PS50010. DH_2. 1 hit.
PS50003. PH_DOMAIN. 1 hit.
PS50001. SH2. 1 hit.
PS50002. SH3. 1 hit.
PS00479. ZF_DAG_PE_1. 1 hit.
PS50081. ZF_DAG_PE_2. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform a (identifier: Q45FX5-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MSRRSTTTST NFGLSWSLVD VISSSTAVFK VPMNGGCDLW IGCARWLRDM     50
KVLTTDKNGT MLEFASVLRD GILLCRLANT LVPNGIDQKK IMRTNQPSPF 100
LCCNNINYFA MFCKTYFNLE DADLFTAEDL YYMNGFQKVL KTLSFLSHTK 150
ESLSRGVDPF PDTDNNQEGT SNGSEFEDDV EIYQSLHDNI ENVDPNRTIY 200
GPITSADPEE QQSEQLYDRI VTNRKPSMNE NDLQNTPTLK RNRCIRELYD 250
TEKNYVAQAL VTIIKTFYEP LKGIIPTSDY NIIFGNIEEI NVLHTALLAD 300
LEYPVKVALG LSDATPPRPI SLNECVPQTI GEVFIKYRDQ FLAYGKYCSN 350
LPDSRKLSNE LLKTNEFISR NINELTAQGN CKFGMNDLLC VPFQRLTKYP 400
LLLKELQKKT DLASPDRKSL EEAVEVMEDV CNYINEESRD TNAIKVIDEI 450
EQSITDLSMP LNVKLHDYGR VNLDGEVKMA ESTLTQAGKP KQRYIFLFDK 500
VIVVCKAANK VMAAKTTGAS ARTNTFTYKN AYVMSELTID KNASLDVKSG 550
GTITRRTQYV IIMTRDRNEN NEITQLTFYF KNEATRNNWM TALLLSKSNV 600
SPTDYLRDTN HKVAFHSFRV DVKNPATCDV CDKLMKGLQY QGYKCESCNM 650
SMHKECLGLK KCEAVRKSTH ETRSSQSFNC NRPRFHIHEG DIVVANSNST 700
PSDLSYLQFA KGDRIEVIKM QGHNRFTGCL INNRNRTGLV HLDHVSQSRT 750
TSMIGLSPID SPAGSIAPRV VRNESTVLPN KLLSDGSSRS LSGPHGSRSS 800
RNSSSSTING SMDSVPRQQD YVNTEISEFL WYMGEMERAK AESTLKGTPN 850
GTFLVRYSKN RKQTAISLSY KNDVKHMIIE QNSDGKVYLD EDYIFNSTVE 900
LVQYYRSNNL IEIFAALDTC LKNPYSQCKV FKAVHDYDAP SPNNEGKFLS 950
FKTGDIVVLL DTVGEDRGWW KGQVNNKSGF FPLSYVKPYD PATEGSSSPV 1000
TPTSSSS 1007
Length:1,007
Mass (Da):113,554
Last modified:September 13, 2005 - v1
Checksum:i4B0E7A79C7BB2DFD
GO
Isoform b (identifier: Q45FX5-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-32: Missing.

Show »
Length:975
Mass (Da):110,109
Checksum:iA0A0C4862F56F3B0
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 3232Missing in isoform b. VSP_018992Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ136172 mRNA. Translation: AAZ66767.1.
FO080787 Genomic DNA. Translation: CCD66769.1.
FO080787 Genomic DNA. Translation: CCD66770.1.
PIRiT15778.
RefSeqiNP_001041222.1. NM_001047757.2. [Q45FX5-2]
NP_001041223.1. NM_001047758.1. [Q45FX5-1]
UniGeneiCel.7082.

Genome annotation databases

EnsemblMetazoaiC35B8.2b; C35B8.2b; WBGene00006887. [Q45FX5-1]
GeneIDi181153.
KEGGicel:CELE_C35B8.2.
UCSCiC35B8.2a.1. c. elegans. [Q45FX5-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Web resourcesi

Protein Spotlight

Nematode tempo - Issue 71 of June 2006

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ136172 mRNA. Translation: AAZ66767.1 .
FO080787 Genomic DNA. Translation: CCD66769.1 .
FO080787 Genomic DNA. Translation: CCD66770.1 .
PIRi T15778.
RefSeqi NP_001041222.1. NM_001047757.2. [Q45FX5-2 ]
NP_001041223.1. NM_001047758.1. [Q45FX5-1 ]
UniGenei Cel.7082.

3D structure databases

ProteinModelPortali Q45FX5.
SMRi Q45FX5. Positions 34-658, 801-990.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 46070. 6 interactions.
DIPi DIP-25959N.
IntActi Q45FX5. 27 interactions.
MINTi MINT-1070973.

Proteomic databases

PaxDbi Q45FX5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai C35B8.2b ; C35B8.2b ; WBGene00006887 . [Q45FX5-1 ]
GeneIDi 181153.
KEGGi cel:CELE_C35B8.2.
UCSCi C35B8.2a.1. c. elegans. [Q45FX5-1 ]

Organism-specific databases

CTDi 181153.
WormBasei C35B8.2a ; CE38040 ; WBGene00006887 ; vav-1.
C35B8.2b ; CE39333 ; WBGene00006887 ; vav-1.

Phylogenomic databases

eggNOGi COG5422.
GeneTreei ENSGT00740000115307.
HOGENOMi HOG000020846.
InParanoidi Q45FX5.
KOi K05730.
OMAi VELVQYY.
OrthoDBi EOG78SQH7.
PhylomeDBi Q45FX5.

Enzyme and pathway databases

SignaLinki Q45FX5.

Miscellaneous databases

NextBioi 912636.

Family and domain databases

Gene3Di 1.10.418.10. 1 hit.
1.20.900.10. 1 hit.
2.30.29.30. 1 hit.
3.30.505.10. 1 hit.
InterProi IPR001715. CH-domain.
IPR000219. DH-domain.
IPR001331. GDS_CDC24_CS.
IPR001849. PH_domain.
IPR011993. PH_like_dom.
IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
IPR000980. SH2.
IPR011511. SH3_2.
IPR001452. SH3_domain.
IPR013315. Spectrin_alpha_SH3.
[Graphical view ]
Pfami PF00130. C1_1. 1 hit.
PF00307. CH. 1 hit.
PF00169. PH. 1 hit.
PF00621. RhoGEF. 1 hit.
PF00017. SH2. 1 hit.
PF07653. SH3_2. 1 hit.
[Graphical view ]
PRINTSi PR00401. SH2DOMAIN.
PR00452. SH3DOMAIN.
PR01887. SPECTRNALPHA.
SMARTi SM00109. C1. 1 hit.
SM00033. CH. 1 hit.
SM00233. PH. 1 hit.
SM00325. RhoGEF. 1 hit.
SM00252. SH2. 1 hit.
SM00326. SH3. 1 hit.
[Graphical view ]
SUPFAMi SSF47576. SSF47576. 1 hit.
SSF48065. SSF48065. 1 hit.
SSF50044. SSF50044. 2 hits.
SSF55550. SSF55550. 1 hit.
PROSITEi PS50021. CH. 1 hit.
PS00741. DH_1. 1 hit.
PS50010. DH_2. 1 hit.
PS50003. PH_DOMAIN. 1 hit.
PS50001. SH2. 1 hit.
PS50002. SH3. 1 hit.
PS00479. ZF_DAG_PE_1. 1 hit.
PS50081. ZF_DAG_PE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "The Rho/Rac family guanine nucleotide exchange factor VAV-1 regulates rhythmic behaviors in Caenorhabditis elegans."
    Norman K.R., Fazzio R.T., Mellem J.E., Espelt M.V., Strange K., Beckerle M.C., Maricq A.V.
    Cell 123:119-132(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM A), FUNCTION, TISSUE SPECIFICITY, MUTAGENESIS OF TYR-183; TYR-200 AND TYR-217.
  2. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], ALTERNATIVE SPLICING.
    Strain: Bristol N2.

Entry informationi

Entry nameiVAV_CAEEL
AccessioniPrimary (citable) accession number: Q45FX5
Secondary accession number(s): Q18479
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: September 13, 2005
Last modified: September 3, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Protein Spotlight
    Protein Spotlight articles and cited UniProtKB/Swiss-Prot entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi