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Protein

Uncharacterized HTH-type transcriptional regulator YydK

Gene

yydK

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi29 – 48H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU40130-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YydK
Gene namesi
Name:yydK
Ordered Locus Names:BSU40130
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000506921 – 236Uncharacterized HTH-type transcriptional regulator YydKAdd BLAST236

Proteomic databases

PaxDbiQ45591.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021641.

Structurei

Secondary structure

1236
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi6 – 17Combined sources12
Helixi29 – 35Combined sources7
Helixi40 – 52Combined sources13
Beta strandi55 – 59Combined sources5
Turni60 – 62Combined sources3
Beta strandi63 – 66Combined sources4
Beta strandi75 – 78Combined sources4
Helixi79 – 81Combined sources3
Beta strandi92 – 102Combined sources11
Helixi106 – 112Combined sources7
Beta strandi120 – 129Combined sources10
Beta strandi132 – 142Combined sources11
Turni143 – 145Combined sources3
Helixi151 – 154Combined sources4
Helixi158 – 164Combined sources7
Beta strandi170 – 181Combined sources12
Helixi184 – 190Combined sources7
Beta strandi196 – 207Combined sources12
Beta strandi212 – 220Combined sources9
Turni222 – 224Combined sources3
Beta strandi227 – 231Combined sources5

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3BWGX-ray2.09A/B/C1-236[»]
ProteinModelPortaliQ45591.
SMRiQ45591.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ45591.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 69HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108S3Y. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000279750.
InParanoidiQ45591.
KOiK03489.
OMAiENECRIT.
PhylomeDBiQ45591.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q45591-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLKYQQIATE IETYIEEHQL QQGDKLPVLE TLMAQFEVSK STITKSLELL
60 70 80 90 100
EQKGAIFQVR GSGIFVRKHK RKGYISLLSN QGFKKDLEDF NVTSKVIELD
110 120 130 140 150
VRKPTPEAAE NLNIGMDEDI YYVKRVRYIN GQTLCYEESY YTKSIVTYLN
160 170 180 190 200
NEIVSHSIFH YIREGLGLKI GFSDLFLHVG QLNEEEAEYL GLEAGLPKLY
210 220 230
IESIFHLTNG QPFDYSKISY NYEQSQFVVQ ANSFLL
Length:236
Mass (Da):27,279
Last modified:April 3, 2002 - v2
Checksum:iB6877ECA5A3858DA
GO

Sequence cautioni

The sequence BAA11271 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D78193 Genomic DNA. Translation: BAA11271.1. Different initiation.
AL009126 Genomic DNA. Translation: CAB16050.1.
PIRiA70092.
RefSeqiNP_391893.1. NC_000964.3.
WP_003226988.1. NZ_JNCM01000034.1.

Genome annotation databases

EnsemblBacteriaiCAB16050; CAB16050; BSU40130.
GeneIDi937726.
KEGGibsu:BSU40130.
PATRICi18980096. VBIBacSub10457_4210.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D78193 Genomic DNA. Translation: BAA11271.1. Different initiation.
AL009126 Genomic DNA. Translation: CAB16050.1.
PIRiA70092.
RefSeqiNP_391893.1. NC_000964.3.
WP_003226988.1. NZ_JNCM01000034.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3BWGX-ray2.09A/B/C1-236[»]
ProteinModelPortaliQ45591.
SMRiQ45591.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021641.

Proteomic databases

PaxDbiQ45591.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB16050; CAB16050; BSU40130.
GeneIDi937726.
KEGGibsu:BSU40130.
PATRICi18980096. VBIBacSub10457_4210.

Phylogenomic databases

eggNOGiENOG4108S3Y. Bacteria.
COG2188. LUCA.
HOGENOMiHOG000279750.
InParanoidiQ45591.
KOiK03489.
OMAiENECRIT.
PhylomeDBiQ45591.

Enzyme and pathway databases

BioCyciBSUB:BSU40130-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ45591.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011663. UTRA.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00392. GntR. 1 hit.
PF07702. UTRA. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
SM00866. UTRA. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF64288. SSF64288. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYYDK_BACSU
AccessioniPrimary (citable) accession number: Q45591
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 3, 2002
Last sequence update: April 3, 2002
Last modified: November 2, 2016
This is version 111 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.