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Protein

Uncharacterized protein YbbP

Gene

ybbP

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciBSUB:BSU01750-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbbP
Gene namesi
Name:ybbP
Ordered Locus Names:BSU01750
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001570 Componenti: Chromosome

Organism-specific databases

GenoListiBSU01750.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3221HelicalSequence AnalysisAdd
BLAST
Transmembranei40 – 6021HelicalSequence AnalysisAdd
BLAST
Transmembranei61 – 8121HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 273273Uncharacterized protein YbbPPRO_0000360441Add
BLAST

Proteomic databases

PaxDbiQ45589.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100000998.

Structurei

3D structure databases

ProteinModelPortaliQ45589.
SMRiQ45589. Positions 60-238.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG1624.
HOGENOMiHOG000054800.
InParanoidiQ45589.
KOiK18672.
OMAiPLSENPF.
OrthoDBiEOG6DRPM4.
PhylomeDBiQ45589.

Family and domain databases

InterProiIPR014046. c-di-AMP_synthase_like.
IPR003390. DNA_integrity_scan_DisA_N.
[Graphical view]
PfamiPF02457. DisA_N. 1 hit.
[Graphical view]
PIRSFiPIRSF004793. UCP004793. 1 hit.
TIGRFAMsiTIGR00159. TIGR00159. 1 hit.

Sequencei

Sequence statusi: Complete.

Q45589-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAFEDIPFLQ YLGNAVDILL VWYVIYKLIM VIRGTKAVQL LKGIVVIVLV
60 70 80 90 100
RMASQYLGLS TLQWLMDQAI TWGFLAIIII FQPELRRALE QLGRGRFFSR
110 120 130 140 150
SGTPVEEAQQ KTIEAITKAI NYMAKRRIGA LLTIERDTGM GDYIETGIPL
160 170 180 190 200
NAKVSSELLI NIFIPNTPLH DGAVIMKNNE IAAAACYLPL SESPFISKEL
210 220 230 240 250
GTRHRAAVGI SEVTDSLTII VSEETGGVSV AKNGDLHREL TEEALKEMLE
260 270
AEFKKNTRDT SSNRWYWRGK KNG
Length:273
Mass (Da):30,547
Last modified:June 16, 2009 - v3
Checksum:i29F2984C5F90007C
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti270 – 2701K → R in BAA19509 (PubMed:9274029).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002150 Genomic DNA. Translation: BAA19509.1.
AL009126 Genomic DNA. Translation: CAB11951.2.
PIRiH69744.
RefSeqiNP_388056.2. NC_000964.3.
WP_003223651.1. NZ_JNCM01000030.1.

Genome annotation databases

EnsemblBacteriaiCAB11951; CAB11951; BSU01750.
GeneIDi11238083.
938735.
KEGGibsu:BSU01750.
PATRICi18971903. VBIBacSub10457_0180.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002150 Genomic DNA. Translation: BAA19509.1.
AL009126 Genomic DNA. Translation: CAB11951.2.
PIRiH69744.
RefSeqiNP_388056.2. NC_000964.3.
WP_003223651.1. NZ_JNCM01000030.1.

3D structure databases

ProteinModelPortaliQ45589.
SMRiQ45589. Positions 60-238.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100000998.

Proteomic databases

PaxDbiQ45589.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB11951; CAB11951; BSU01750.
GeneIDi11238083.
938735.
KEGGibsu:BSU01750.
PATRICi18971903. VBIBacSub10457_0180.

Organism-specific databases

GenoListiBSU01750.

Phylogenomic databases

eggNOGiCOG1624.
HOGENOMiHOG000054800.
InParanoidiQ45589.
KOiK18672.
OMAiPLSENPF.
OrthoDBiEOG6DRPM4.
PhylomeDBiQ45589.

Enzyme and pathway databases

BioCyciBSUB:BSU01750-MONOMER.

Family and domain databases

InterProiIPR014046. c-di-AMP_synthase_like.
IPR003390. DNA_integrity_scan_DisA_N.
[Graphical view]
PfamiPF02457. DisA_N. 1 hit.
[Graphical view]
PIRSFiPIRSF004793. UCP004793. 1 hit.
TIGRFAMsiTIGR00159. TIGR00159. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of a 31 kb segment of the Bacillus subtilis chromosome in the area of the rrnH and rrnG operons."
    Liu H., Haga K., Yasumoto K., Ohashi Y., Yoshikawa H., Takahashi H.
    Microbiology 143:2763-2767(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.
  3. "From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later."
    Barbe V., Cruveiller S., Kunst F., Lenoble P., Meurice G., Sekowska A., Vallenet D., Wang T., Moszer I., Medigue C., Danchin A.
    Microbiology 155:1758-1775(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: SEQUENCE REVISION TO 270.

Entry informationi

Entry nameiYBBP_BACSU
AccessioniPrimary (citable) accession number: Q45589
Secondary accession number(s): Q45590, Q7DL98
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 20, 2009
Last sequence update: June 16, 2009
Last modified: June 24, 2015
This is version 83 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.