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Protein

Uncharacterized HTH-type transcriptional regulator YbbH

Gene

ybbH

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi39 – 5820H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU01690-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbbH
Gene namesi
Name:ybbH
Ordered Locus Names:BSU01690
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 283283Uncharacterized HTH-type transcriptional regulator YbbHPRO_0000068629Add
BLAST

Proteomic databases

PaxDbiQ45581.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100000963.

Structurei

Secondary structure

1
283
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi5 – 128Combined sources
Helixi13 – 153Combined sources
Helixi18 – 2912Combined sources
Helixi31 – 355Combined sources
Helixi39 – 457Combined sources
Helixi50 – 5910Combined sources
Helixi65 – 7713Combined sources
Helixi79 – 813Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2O3FX-ray1.75A/B/C1-108[»]
ProteinModelPortaliQ45581.
SMRiQ45581. Positions 1-83, 95-259.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ45581.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 7977HTH rpiR-typePROSITE-ProRule annotationAdd
BLAST
Domaini123 – 264142SISPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH rpiR-type DNA-binding domain.PROSITE-ProRule annotation
Contains 1 SIS domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG1737. LUCA.
HOGENOMiHOG000027157.
InParanoidiQ45581.
OMAiLRPAAMS.
OrthoDBiEOG6HMXHM.
PhylomeDBiQ45581.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR000281. HTH_RpiR.
IPR001347. SIS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01418. HTH_6. 1 hit.
PF01380. SIS. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51071. HTH_RPIR. 1 hit.
PS51464. SIS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q45581-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATGGLAIIQ SMKHKLPPSE RKLADYILAH PHKAIESTVN EISALANSSD
60 70 80 90 100
AAVIRLCKSL GLKGFQDLKM RVAGDLAKPT FQGYRDIVPH EPLPSISEKT
110 120 130 140 150
AGNAIQAIQD TSDLMDYKEL ERAVSLLLKA HTVHFIGLGA SGIVAKDAQQ
160 170 180 190 200
KWLRIHKQAT AFTDTHLVAS LIANADKDDI VFAISFSGET QEIVELFAMA
210 220 230 240 250
KEKGITTISL TQFSQTSVSA LADVPLYTAH SNEALIRSAA TSSRLAQLFI
260 270 280
IDVLFLGMAA EQYETTTGYI DKTRAAIQSM RIK
Length:283
Mass (Da):30,709
Last modified:July 3, 2003 - v3
Checksum:i690C68B78BF19032
GO

Sequence cautioni

The sequence BAA19503.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002150 Genomic DNA. Translation: BAA19503.1. Different initiation.
AL009126 Genomic DNA. Translation: CAB11945.1.
PIRiC69744.
RefSeqiNP_388050.1. NC_000964.3.
WP_003234966.1. NZ_JNCM01000030.1.

Genome annotation databases

EnsemblBacteriaiCAB11945; CAB11945; BSU01690.
GeneIDi938885.
KEGGibsu:BSU01690.
PATRICi18971881. VBIBacSub10457_0174.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002150 Genomic DNA. Translation: BAA19503.1. Different initiation.
AL009126 Genomic DNA. Translation: CAB11945.1.
PIRiC69744.
RefSeqiNP_388050.1. NC_000964.3.
WP_003234966.1. NZ_JNCM01000030.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2O3FX-ray1.75A/B/C1-108[»]
ProteinModelPortaliQ45581.
SMRiQ45581. Positions 1-83, 95-259.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100000963.

Proteomic databases

PaxDbiQ45581.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB11945; CAB11945; BSU01690.
GeneIDi938885.
KEGGibsu:BSU01690.
PATRICi18971881. VBIBacSub10457_0174.

Phylogenomic databases

eggNOGiCOG1737. LUCA.
HOGENOMiHOG000027157.
InParanoidiQ45581.
OMAiLRPAAMS.
OrthoDBiEOG6HMXHM.
PhylomeDBiQ45581.

Enzyme and pathway databases

BioCyciBSUB:BSU01690-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ45581.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR000281. HTH_RpiR.
IPR001347. SIS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01418. HTH_6. 1 hit.
PF01380. SIS. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51071. HTH_RPIR. 1 hit.
PS51464. SIS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequence and analysis of a 31 kb segment of the Bacillus subtilis chromosome in the area of the rrnH and rrnG operons."
    Liu H., Haga K., Yasumoto K., Ohashi Y., Yoshikawa H., Takahashi H.
    Microbiology 143:2763-2767(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: 168.
  2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
    Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
    , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
    Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: 168.

Entry informationi

Entry nameiYBBH_BACSU
AccessioniPrimary (citable) accession number: Q45581
Secondary accession number(s): Q45580
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: July 3, 2003
Last modified: June 8, 2016
This is version 108 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.