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Protein

Uncharacterized HTH-type transcriptional regulator YbbH

Gene

ybbH

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi39 – 58H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBSUB:BSU01690-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbbH
Gene namesi
Name:ybbH
Ordered Locus Names:BSU01690
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000686291 – 283Uncharacterized HTH-type transcriptional regulator YbbHAdd BLAST283

Proteomic databases

PaxDbiQ45581.
PRIDEiQ45581.

Interactioni

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100000963.

Structurei

Secondary structure

1283
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi5 – 12Combined sources8
Helixi13 – 15Combined sources3
Helixi18 – 29Combined sources12
Helixi31 – 35Combined sources5
Helixi39 – 45Combined sources7
Helixi50 – 59Combined sources10
Helixi65 – 77Combined sources13
Helixi79 – 81Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2O3FX-ray1.75A/B/C1-108[»]
ProteinModelPortaliQ45581.
SMRiQ45581.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ45581.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 79HTH rpiR-typePROSITE-ProRule annotationAdd BLAST77
Domaini123 – 264SISPROSITE-ProRule annotationAdd BLAST142

Sequence similaritiesi

Contains 1 HTH rpiR-type DNA-binding domain.PROSITE-ProRule annotation
Contains 1 SIS domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG1737. LUCA.
HOGENOMiHOG000027157.
InParanoidiQ45581.
OMAiHMQITSA.
PhylomeDBiQ45581.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR000281. HTH_RpiR.
IPR001347. SIS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01418. HTH_6. 1 hit.
PF01380. SIS. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51071. HTH_RPIR. 1 hit.
PS51464. SIS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q45581-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATGGLAIIQ SMKHKLPPSE RKLADYILAH PHKAIESTVN EISALANSSD
60 70 80 90 100
AAVIRLCKSL GLKGFQDLKM RVAGDLAKPT FQGYRDIVPH EPLPSISEKT
110 120 130 140 150
AGNAIQAIQD TSDLMDYKEL ERAVSLLLKA HTVHFIGLGA SGIVAKDAQQ
160 170 180 190 200
KWLRIHKQAT AFTDTHLVAS LIANADKDDI VFAISFSGET QEIVELFAMA
210 220 230 240 250
KEKGITTISL TQFSQTSVSA LADVPLYTAH SNEALIRSAA TSSRLAQLFI
260 270 280
IDVLFLGMAA EQYETTTGYI DKTRAAIQSM RIK
Length:283
Mass (Da):30,709
Last modified:July 3, 2003 - v3
Checksum:i690C68B78BF19032
GO

Sequence cautioni

The sequence BAA19503 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002150 Genomic DNA. Translation: BAA19503.1. Different initiation.
AL009126 Genomic DNA. Translation: CAB11945.1.
PIRiC69744.
RefSeqiNP_388050.1. NC_000964.3.
WP_003234966.1. NZ_JNCM01000030.1.

Genome annotation databases

EnsemblBacteriaiCAB11945; CAB11945; BSU01690.
GeneIDi938885.
KEGGibsu:BSU01690.
PATRICi18971881. VBIBacSub10457_0174.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB002150 Genomic DNA. Translation: BAA19503.1. Different initiation.
AL009126 Genomic DNA. Translation: CAB11945.1.
PIRiC69744.
RefSeqiNP_388050.1. NC_000964.3.
WP_003234966.1. NZ_JNCM01000030.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2O3FX-ray1.75A/B/C1-108[»]
ProteinModelPortaliQ45581.
SMRiQ45581.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100000963.

Proteomic databases

PaxDbiQ45581.
PRIDEiQ45581.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB11945; CAB11945; BSU01690.
GeneIDi938885.
KEGGibsu:BSU01690.
PATRICi18971881. VBIBacSub10457_0174.

Phylogenomic databases

eggNOGiCOG1737. LUCA.
HOGENOMiHOG000027157.
InParanoidiQ45581.
OMAiHMQITSA.
PhylomeDBiQ45581.

Enzyme and pathway databases

BioCyciBSUB:BSU01690-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ45581.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR000281. HTH_RpiR.
IPR001347. SIS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01418. HTH_6. 1 hit.
PF01380. SIS. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS51071. HTH_RPIR. 1 hit.
PS51464. SIS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBBH_BACSU
AccessioniPrimary (citable) accession number: Q45581
Secondary accession number(s): Q45580
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: July 3, 2003
Last modified: November 2, 2016
This is version 111 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.