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Q45388

- TEX_BORPE

UniProt

Q45388 - TEX_BORPE

Protein

Protein tex

Gene

tex

Organism
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 82 (01 Oct 2014)
      Sequence version 2 (19 Sep 2003)
      Previous versions | rss
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    Functioni

    Transcription accessory protein. Exact function not known.

    GO - Molecular functioni

    1. hydrolase activity, acting on ester bonds Source: InterPro
    2. RNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. nucleobase-containing compound metabolic process Source: InterPro

    Keywords - Ligandi

    RNA-binding

    Enzyme and pathway databases

    BioCyciBPER257313:BP1144-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein tex
    Gene namesi
    Name:tex
    Ordered Locus Names:BP1144
    OrganismiBordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
    Taxonomic identifieri257313 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella
    ProteomesiUP000002676: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 791791Protein texPRO_0000215103Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi257313.BP1144.

    Structurei

    3D structure databases

    ProteinModelPortaliQ45388.
    SMRiQ45388. Positions 16-742.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini670 – 73970S1 motifPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 S1 motif domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG2183.
    HOGENOMiHOG000270497.
    KOiK06959.
    OMAiWADTESI.
    OrthoDBiEOG6WT8CC.

    Family and domain databases

    Gene3Di1.10.10.650. 1 hit.
    1.10.150.310. 1 hit.
    1.10.3500.10. 2 hits.
    2.40.50.140. 1 hit.
    3.30.420.140. 1 hit.
    InterProiIPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    IPR012337. RNaseH-like_dom.
    IPR010994. RuvA_2-like.
    IPR023323. Tex-like_dom.
    IPR023319. Tex-like_HTH_dom.
    IPR018974. Tex-like_N.
    IPR023097. Tex_RuvX-like_dom.
    IPR006641. YqgF/RNaseH-like_dom.
    [Graphical view]
    PfamiPF00575. S1. 1 hit.
    PF09371. Tex_N. 1 hit.
    [Graphical view]
    SMARTiSM00316. S1. 1 hit.
    SM00732. YqgFc. 1 hit.
    [Graphical view]
    SUPFAMiSSF47781. SSF47781. 2 hits.
    SSF50249. SSF50249. 1 hit.
    SSF53098. SSF53098. 1 hit.
    PROSITEiPS50126. S1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q45388-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPETSATTNA APGVDHARII AQLATEIGAR ASQVASAVEL LDDGATVPFI    50
    ARYRKEATGG LDDGALRTLE VRLGYLRELE ERRGAILESI TQQGKLTPEL 100
    QQEIATAETK QRLEDLYAPY KPKRRTRAQI AREAGLEPLA DAILADPACD 150
    PAALAAQYLN PEASINDAKA ALDGARDILA ERHAENADLL ADIREHLWST 200
    GLLYSKMVEG KETDGANFRD WFDFNEPLRT LPSHRILALM RGRQQGVLEL 250
    RVGLEADLEA ETPHPCVVRI ASFLKLGNGL FALDATPRAR WLGEVCRWTW 300
    RVKLLTAFES ELFGRLRESA EAEAIRVFAA NLKDLLLAAP AGPKTVLGLD 350
    PGIRTGCKVA VIDRTGKVVD TATVYPFEPR RDREGTIKTL AALAARHKVE 400
    LIAIGNGTAS RESEKLVGDM MARFPDLALT RVVVSEAGAS VYSASETAAL 450
    EFPDLDVTLR GAVSIARRLQ DPLAELVKID PKAIGVGQYQ HDVNQRELAR 500
    SLDAVVEDCV NAVGVDVNTA SAALLARVSG LNTLLAKNIV AWRDENGAFP 550
    TRDMLRKVPR FGEKAFEQAA GFLRIPNGDN PLDASAVHPE AYPVVERIVA 600
    RIKADVRHII GQREALKGVS PSDFTDERFG LPTVRDIFAE LEKPGRDPRP 650
    EFKTAQFKEG VETLNDLFPG MVLEGVVTNV ANFGAFVDIG VHQDGLVHIS 700
    ALAEKFVKDP RDVVRVGQTV TVKVLEVDVA RKRVALTMRL NDAAEPARRG 750
    NGAGAGAARG ADRGARRPQA DNGKGAPANS AMADAFAKLK R 791
    Length:791
    Mass (Da):85,727
    Last modified:September 19, 2003 - v2
    Checksum:i04F6A8B6A6FC8714
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti613 – 6175REALK → ARRSQ in CAA64672. (PubMed:8755871)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X95386 Genomic DNA. Translation: CAA64672.1.
    BX640414 Genomic DNA. Translation: CAE41441.1.
    RefSeqiNP_879920.1. NC_002929.2.

    Genome annotation databases

    EnsemblBacteriaiCAE41441; CAE41441; BP1144.
    GeneIDi2667413.
    KEGGibpe:BP1144.
    PATRICi21155458. VBIBorPer7866_1228.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X95386 Genomic DNA. Translation: CAA64672.1 .
    BX640414 Genomic DNA. Translation: CAE41441.1 .
    RefSeqi NP_879920.1. NC_002929.2.

    3D structure databases

    ProteinModelPortali Q45388.
    SMRi Q45388. Positions 16-742.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 257313.BP1144.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAE41441 ; CAE41441 ; BP1144 .
    GeneIDi 2667413.
    KEGGi bpe:BP1144.
    PATRICi 21155458. VBIBorPer7866_1228.

    Phylogenomic databases

    eggNOGi COG2183.
    HOGENOMi HOG000270497.
    KOi K06959.
    OMAi WADTESI.
    OrthoDBi EOG6WT8CC.

    Enzyme and pathway databases

    BioCyci BPER257313:BP1144-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.650. 1 hit.
    1.10.150.310. 1 hit.
    1.10.3500.10. 2 hits.
    2.40.50.140. 1 hit.
    3.30.420.140. 1 hit.
    InterProi IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    IPR012337. RNaseH-like_dom.
    IPR010994. RuvA_2-like.
    IPR023323. Tex-like_dom.
    IPR023319. Tex-like_HTH_dom.
    IPR018974. Tex-like_N.
    IPR023097. Tex_RuvX-like_dom.
    IPR006641. YqgF/RNaseH-like_dom.
    [Graphical view ]
    Pfami PF00575. S1. 1 hit.
    PF09371. Tex_N. 1 hit.
    [Graphical view ]
    SMARTi SM00316. S1. 1 hit.
    SM00732. YqgFc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47781. SSF47781. 2 hits.
    SSF50249. SSF50249. 1 hit.
    SSF53098. SSF53098. 1 hit.
    PROSITEi PS50126. S1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "A new gene locus of Bordetella pertussis defines a novel family of prokaryotic transcriptional accessory proteins."
      Fuchs T.M., Deppisch H., Scarlato V., Gross R.
      J. Bacteriol. 178:4445-4452(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: Tohama I / ATCC BAA-589 / NCTC 13251.
    2. "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."
      Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S.
      , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J.
      Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Tohama I / ATCC BAA-589 / NCTC 13251.

    Entry informationi

    Entry nameiTEX_BORPE
    AccessioniPrimary (citable) accession number: Q45388
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: September 19, 2003
    Last modified: October 1, 2014
    This is version 82 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3