Q45388 (TEX_BORPE) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Protein tex

Gene names

Name:	tex
Ordered Locus Names:	BP1144

Organism

Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) [Reference proteome] [HAMAP]

Taxonomic identifier

257313 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Alcaligenaceae › Bordetella › Bordetella pertussis

Protein attributes

Sequence length	791 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Function	Transcription accessory protein. Exact function not known.
Sequence similarities	Contains 1 S1 motif domain.

Ontologies

Keywords
Ligand	RNA-binding
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	nucleobase-containing compound metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: UniProtKB-KW hydrolase activity, acting on ester bonds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 791	791	Protein tex		PRO_0000215103
Regions
	Domain	670 – 739	70	S1 motif
Experimental info
	Sequence conflict	613 – 617	5	REALK → ARRSQ in CAA64672. Ref.1

Sequences

	Sequence		Length	Mass (Da)
	Q45388 [UniParc]. Last modified September 19, 2003. Version 2. Checksum: 04F6A8B6A6FC8714	FASTA	791	85,727
	10 20 30 40 50 60 MPETSATTNA APGVDHARII AQLATEIGAR ASQVASAVEL LDDGATVPFI ARYRKEATGG 70 80 90 100 110 120 LDDGALRTLE VRLGYLRELE ERRGAILESI TQQGKLTPEL QQEIATAETK QRLEDLYAPY 130 140 150 160 170 180 KPKRRTRAQI AREAGLEPLA DAILADPACD PAALAAQYLN PEASINDAKA ALDGARDILA 190 200 210 220 230 240 ERHAENADLL ADIREHLWST GLLYSKMVEG KETDGANFRD WFDFNEPLRT LPSHRILALM 250 260 270 280 290 300 RGRQQGVLEL RVGLEADLEA ETPHPCVVRI ASFLKLGNGL FALDATPRAR WLGEVCRWTW 310 320 330 340 350 360 RVKLLTAFES ELFGRLRESA EAEAIRVFAA NLKDLLLAAP AGPKTVLGLD PGIRTGCKVA 370 380 390 400 410 420 VIDRTGKVVD TATVYPFEPR RDREGTIKTL AALAARHKVE LIAIGNGTAS RESEKLVGDM 430 440 450 460 470 480 MARFPDLALT RVVVSEAGAS VYSASETAAL EFPDLDVTLR GAVSIARRLQ DPLAELVKID 490 500 510 520 530 540 PKAIGVGQYQ HDVNQRELAR SLDAVVEDCV NAVGVDVNTA SAALLARVSG LNTLLAKNIV 550 560 570 580 590 600 AWRDENGAFP TRDMLRKVPR FGEKAFEQAA GFLRIPNGDN PLDASAVHPE AYPVVERIVA 610 620 630 640 650 660 RIKADVRHII GQREALKGVS PSDFTDERFG LPTVRDIFAE LEKPGRDPRP EFKTAQFKEG 670 680 690 700 710 720 VETLNDLFPG MVLEGVVTNV ANFGAFVDIG VHQDGLVHIS ALAEKFVKDP RDVVRVGQTV 730 740 750 760 770 780 TVKVLEVDVA RKRVALTMRL NDAAEPARRG NGAGAGAARG ADRGARRPQA DNGKGAPANS 790 AMADAFAKLK R

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"A new gene locus of Bordetella pertussis defines a novel family of prokaryotic transcriptional accessory proteins." Fuchs T.M., Deppisch H., Scarlato V., Gross R. J. Bacteriol. 178:4445-4452(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: Tohama I / ATCC BAA-589 / NCTC 13251.
[2]	"Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica." Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S. , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J. Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tohama I / ATCC BAA-589 / NCTC 13251.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X95386 Genomic DNA. Translation: CAA64672.1. BX640414 Genomic DNA. Translation: CAE41441.1.
RefSeq	NP_879920.1. NC_002929.2.
3D structure databases
ProteinModelPortal	Q45388.
SMR	Q45388. Positions 16-742.
ModBase	Search...
Protein-protein interaction databases
STRING	257313.BP1144.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CAE41441; CAE41441; BP1144.
GeneID	2667413.
KEGG	bpe:BP1144.
PATRIC	21155458. VBIBorPer7866_1228.
Phylogenomic databases
eggNOG	COG2183.
HOGENOM	HOG000270497.
KO	K06959.
OMA	YKQKRRT.
ProtClustDB	CLSK2305641.
Enzyme and pathway databases
BioCyc	BPER257313:BP1144-MONOMER.
Family and domain databases
Gene3D	1.10.10.650. 1 hit. 1.10.150.310. 1 hit. 1.10.3500.10. 2 hits. 2.40.50.140. 1 hit. 3.30.420.140. 1 hit.
InterPro	IPR012340. NA-bd_OB-fold. IPR003029. Rbsml_prot_S1_RNA-bd_dom. IPR022967. RNA-binding_domain_S1. IPR023323. Tex-like_dom. IPR023319. Tex-like_HTH_dom. IPR018974. Tex-like_N. IPR023097. Tex_RuvX-like_dom. IPR006641. YqgF/RNaseH-like_dom. [Graphical view]
Pfam	PF00575. S1. 1 hit. PF09371. Tex_N. 1 hit. [Graphical view]
SMART	SM00316. S1. 1 hit. SM00732. YqgFc. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS50126. S1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

TEX_BORPE

Accession

Primary (citable) accession number: Q45388

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	September 19, 2003
Last modified:	May 1, 2013
This is version 78 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program