Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein tex

Gene

tex

Organism
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Transcription accessory protein. Exact function not known.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciBPER257313:BP1144-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein tex
Gene namesi
Name:tex
Ordered Locus Names:BP1144
OrganismiBordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Taxonomic identifieri257313 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella
ProteomesiUP000002676 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 791791Protein texPRO_0000215103Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257313.BP1144.

Structurei

3D structure databases

ProteinModelPortaliQ45388.
SMRiQ45388. Positions 16-742.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini670 – 73970S1 motifPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 S1 motif domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG2183.
HOGENOMiHOG000270497.
KOiK06959.
OMAiVRWAWRT.
OrthoDBiEOG6WT8CC.

Family and domain databases

Gene3Di1.10.10.650. 1 hit.
1.10.150.310. 1 hit.
1.10.3500.10. 2 hits.
2.40.50.140. 1 hit.
3.30.420.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR012337. RNaseH-like_dom.
IPR010994. RuvA_2-like.
IPR022967. S1_dom.
IPR023323. Tex-like_dom.
IPR023319. Tex-like_HTH_dom.
IPR018974. Tex-like_N.
IPR023097. Tex_RuvX-like_dom.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF00575. S1. 1 hit.
PF09371. Tex_N. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
SM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF47781. SSF47781. 2 hits.
SSF50249. SSF50249. 1 hit.
SSF53098. SSF53098. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q45388-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPETSATTNA APGVDHARII AQLATEIGAR ASQVASAVEL LDDGATVPFI
60 70 80 90 100
ARYRKEATGG LDDGALRTLE VRLGYLRELE ERRGAILESI TQQGKLTPEL
110 120 130 140 150
QQEIATAETK QRLEDLYAPY KPKRRTRAQI AREAGLEPLA DAILADPACD
160 170 180 190 200
PAALAAQYLN PEASINDAKA ALDGARDILA ERHAENADLL ADIREHLWST
210 220 230 240 250
GLLYSKMVEG KETDGANFRD WFDFNEPLRT LPSHRILALM RGRQQGVLEL
260 270 280 290 300
RVGLEADLEA ETPHPCVVRI ASFLKLGNGL FALDATPRAR WLGEVCRWTW
310 320 330 340 350
RVKLLTAFES ELFGRLRESA EAEAIRVFAA NLKDLLLAAP AGPKTVLGLD
360 370 380 390 400
PGIRTGCKVA VIDRTGKVVD TATVYPFEPR RDREGTIKTL AALAARHKVE
410 420 430 440 450
LIAIGNGTAS RESEKLVGDM MARFPDLALT RVVVSEAGAS VYSASETAAL
460 470 480 490 500
EFPDLDVTLR GAVSIARRLQ DPLAELVKID PKAIGVGQYQ HDVNQRELAR
510 520 530 540 550
SLDAVVEDCV NAVGVDVNTA SAALLARVSG LNTLLAKNIV AWRDENGAFP
560 570 580 590 600
TRDMLRKVPR FGEKAFEQAA GFLRIPNGDN PLDASAVHPE AYPVVERIVA
610 620 630 640 650
RIKADVRHII GQREALKGVS PSDFTDERFG LPTVRDIFAE LEKPGRDPRP
660 670 680 690 700
EFKTAQFKEG VETLNDLFPG MVLEGVVTNV ANFGAFVDIG VHQDGLVHIS
710 720 730 740 750
ALAEKFVKDP RDVVRVGQTV TVKVLEVDVA RKRVALTMRL NDAAEPARRG
760 770 780 790
NGAGAGAARG ADRGARRPQA DNGKGAPANS AMADAFAKLK R
Length:791
Mass (Da):85,727
Last modified:September 19, 2003 - v2
Checksum:i04F6A8B6A6FC8714
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti613 – 6175REALK → ARRSQ in CAA64672 (PubMed:8755871).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X95386 Genomic DNA. Translation: CAA64672.1.
BX640414 Genomic DNA. Translation: CAE41441.1.
RefSeqiNP_879920.1. NC_002929.2.
WP_010930212.1. NC_002929.2.

Genome annotation databases

EnsemblBacteriaiCAE41441; CAE41441; BP1144.
GeneIDi2667413.
KEGGibpe:BP1144.
PATRICi21155458. VBIBorPer7866_1228.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X95386 Genomic DNA. Translation: CAA64672.1.
BX640414 Genomic DNA. Translation: CAE41441.1.
RefSeqiNP_879920.1. NC_002929.2.
WP_010930212.1. NC_002929.2.

3D structure databases

ProteinModelPortaliQ45388.
SMRiQ45388. Positions 16-742.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi257313.BP1144.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAE41441; CAE41441; BP1144.
GeneIDi2667413.
KEGGibpe:BP1144.
PATRICi21155458. VBIBorPer7866_1228.

Phylogenomic databases

eggNOGiCOG2183.
HOGENOMiHOG000270497.
KOiK06959.
OMAiVRWAWRT.
OrthoDBiEOG6WT8CC.

Enzyme and pathway databases

BioCyciBPER257313:BP1144-MONOMER.

Family and domain databases

Gene3Di1.10.10.650. 1 hit.
1.10.150.310. 1 hit.
1.10.3500.10. 2 hits.
2.40.50.140. 1 hit.
3.30.420.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR012337. RNaseH-like_dom.
IPR010994. RuvA_2-like.
IPR022967. S1_dom.
IPR023323. Tex-like_dom.
IPR023319. Tex-like_HTH_dom.
IPR018974. Tex-like_N.
IPR023097. Tex_RuvX-like_dom.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF00575. S1. 1 hit.
PF09371. Tex_N. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
SM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF47781. SSF47781. 2 hits.
SSF50249. SSF50249. 1 hit.
SSF53098. SSF53098. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "A new gene locus of Bordetella pertussis defines a novel family of prokaryotic transcriptional accessory proteins."
    Fuchs T.M., Deppisch H., Scarlato V., Gross R.
    J. Bacteriol. 178:4445-4452(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: Tohama I / ATCC BAA-589 / NCTC 13251.
  2. "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."
    Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S.
    , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J.
    Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tohama I / ATCC BAA-589 / NCTC 13251.

Entry informationi

Entry nameiTEX_BORPE
AccessioniPrimary (citable) accession number: Q45388
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: September 19, 2003
Last modified: July 22, 2015
This is version 88 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.