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Q45388

- TEX_BORPE

UniProt

Q45388 - TEX_BORPE

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Protein
Protein tex
Gene
tex, BP1144
Organism
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Status
Reviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

Transcription accessory protein. Exact function not known.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. hydrolase activity, acting on ester bonds Source: InterPro

GO - Biological processi

  1. nucleobase-containing compound metabolic process Source: InterPro
Complete GO annotation...

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciBPER257313:BP1144-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein tex
Gene namesi
Name:tex
Ordered Locus Names:BP1144
OrganismiBordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Taxonomic identifieri257313 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesAlcaligenaceaeBordetella
ProteomesiUP000002676: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 791791Protein tex
PRO_0000215103Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi257313.BP1144.

Structurei

3D structure databases

ProteinModelPortaliQ45388.
SMRiQ45388. Positions 16-742.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini670 – 73970S1 motif
Add
BLAST

Sequence similaritiesi

Contains 1 S1 motif domain.

Phylogenomic databases

eggNOGiCOG2183.
HOGENOMiHOG000270497.
KOiK06959.
OMAiWADTESI.
OrthoDBiEOG6WT8CC.

Family and domain databases

Gene3Di1.10.10.650. 1 hit.
1.10.150.310. 1 hit.
1.10.3500.10. 2 hits.
2.40.50.140. 1 hit.
3.30.420.140. 1 hit.
InterProiIPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR012337. RNaseH-like_dom.
IPR010994. RuvA_2-like.
IPR023323. Tex-like_dom.
IPR023319. Tex-like_HTH_dom.
IPR018974. Tex-like_N.
IPR023097. Tex_RuvX-like_dom.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view]
PfamiPF00575. S1. 1 hit.
PF09371. Tex_N. 1 hit.
[Graphical view]
SMARTiSM00316. S1. 1 hit.
SM00732. YqgFc. 1 hit.
[Graphical view]
SUPFAMiSSF47781. SSF47781. 2 hits.
SSF50249. SSF50249. 1 hit.
SSF53098. SSF53098. 1 hit.
PROSITEiPS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q45388-1 [UniParc]FASTAAdd to Basket

« Hide

MPETSATTNA APGVDHARII AQLATEIGAR ASQVASAVEL LDDGATVPFI    50
ARYRKEATGG LDDGALRTLE VRLGYLRELE ERRGAILESI TQQGKLTPEL 100
QQEIATAETK QRLEDLYAPY KPKRRTRAQI AREAGLEPLA DAILADPACD 150
PAALAAQYLN PEASINDAKA ALDGARDILA ERHAENADLL ADIREHLWST 200
GLLYSKMVEG KETDGANFRD WFDFNEPLRT LPSHRILALM RGRQQGVLEL 250
RVGLEADLEA ETPHPCVVRI ASFLKLGNGL FALDATPRAR WLGEVCRWTW 300
RVKLLTAFES ELFGRLRESA EAEAIRVFAA NLKDLLLAAP AGPKTVLGLD 350
PGIRTGCKVA VIDRTGKVVD TATVYPFEPR RDREGTIKTL AALAARHKVE 400
LIAIGNGTAS RESEKLVGDM MARFPDLALT RVVVSEAGAS VYSASETAAL 450
EFPDLDVTLR GAVSIARRLQ DPLAELVKID PKAIGVGQYQ HDVNQRELAR 500
SLDAVVEDCV NAVGVDVNTA SAALLARVSG LNTLLAKNIV AWRDENGAFP 550
TRDMLRKVPR FGEKAFEQAA GFLRIPNGDN PLDASAVHPE AYPVVERIVA 600
RIKADVRHII GQREALKGVS PSDFTDERFG LPTVRDIFAE LEKPGRDPRP 650
EFKTAQFKEG VETLNDLFPG MVLEGVVTNV ANFGAFVDIG VHQDGLVHIS 700
ALAEKFVKDP RDVVRVGQTV TVKVLEVDVA RKRVALTMRL NDAAEPARRG 750
NGAGAGAARG ADRGARRPQA DNGKGAPANS AMADAFAKLK R 791
Length:791
Mass (Da):85,727
Last modified:September 19, 2003 - v2
Checksum:i04F6A8B6A6FC8714
GO

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti613 – 6175REALK → ARRSQ in CAA64672. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X95386 Genomic DNA. Translation: CAA64672.1.
BX640414 Genomic DNA. Translation: CAE41441.1.
RefSeqiNP_879920.1. NC_002929.2.

Genome annotation databases

EnsemblBacteriaiCAE41441; CAE41441; BP1144.
GeneIDi2667413.
KEGGibpe:BP1144.
PATRICi21155458. VBIBorPer7866_1228.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X95386 Genomic DNA. Translation: CAA64672.1 .
BX640414 Genomic DNA. Translation: CAE41441.1 .
RefSeqi NP_879920.1. NC_002929.2.

3D structure databases

ProteinModelPortali Q45388.
SMRi Q45388. Positions 16-742.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 257313.BP1144.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAE41441 ; CAE41441 ; BP1144 .
GeneIDi 2667413.
KEGGi bpe:BP1144.
PATRICi 21155458. VBIBorPer7866_1228.

Phylogenomic databases

eggNOGi COG2183.
HOGENOMi HOG000270497.
KOi K06959.
OMAi WADTESI.
OrthoDBi EOG6WT8CC.

Enzyme and pathway databases

BioCyci BPER257313:BP1144-MONOMER.

Family and domain databases

Gene3Di 1.10.10.650. 1 hit.
1.10.150.310. 1 hit.
1.10.3500.10. 2 hits.
2.40.50.140. 1 hit.
3.30.420.140. 1 hit.
InterProi IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR012337. RNaseH-like_dom.
IPR010994. RuvA_2-like.
IPR023323. Tex-like_dom.
IPR023319. Tex-like_HTH_dom.
IPR018974. Tex-like_N.
IPR023097. Tex_RuvX-like_dom.
IPR006641. YqgF/RNaseH-like_dom.
[Graphical view ]
Pfami PF00575. S1. 1 hit.
PF09371. Tex_N. 1 hit.
[Graphical view ]
SMARTi SM00316. S1. 1 hit.
SM00732. YqgFc. 1 hit.
[Graphical view ]
SUPFAMi SSF47781. SSF47781. 2 hits.
SSF50249. SSF50249. 1 hit.
SSF53098. SSF53098. 1 hit.
PROSITEi PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "A new gene locus of Bordetella pertussis defines a novel family of prokaryotic transcriptional accessory proteins."
    Fuchs T.M., Deppisch H., Scarlato V., Gross R.
    J. Bacteriol. 178:4445-4452(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: Tohama I / ATCC BAA-589 / NCTC 13251.
  2. "Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica."
    Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L., Cerdeno-Tarraga A.-M., Temple L., James K.D., Harris B., Quail M.A., Achtman M., Atkin R., Baker S.
    , Basham D., Bason N., Cherevach I., Chillingworth T., Collins M., Cronin A., Davis P., Doggett J., Feltwell T., Goble A., Hamlin N., Hauser H., Holroyd S., Jagels K., Leather S., Moule S., Norberczak H., O'Neil S., Ormond D., Price C., Rabbinowitsch E., Rutter S., Sanders M., Saunders D., Seeger K., Sharp S., Simmonds M., Skelton J., Squares R., Squares S., Stevens K., Unwin L., Whitehead S., Barrell B.G., Maskell D.J.
    Nat. Genet. 35:32-40(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Tohama I / ATCC BAA-589 / NCTC 13251.

Entry informationi

Entry nameiTEX_BORPE
AccessioniPrimary (citable) accession number: Q45388
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: September 19, 2003
Last modified: May 14, 2014
This is version 81 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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