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Protein

Nodulation protein D 1

Gene

nodD1

Organism
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi23 – 4220H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Activator, Repressor

Keywords - Biological processi

Nodulation, Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciBJAP224911:GJEJ-2043-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Nodulation protein D 1
Gene namesi
Name:nodD1
Ordered Locus Names:bll2023
OrganismiBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Taxonomic identifieri224911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
Proteomesi
  • UP000002526 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 314314Nodulation protein D 1PRO_0000105703Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224911.bll2023.

Structurei

3D structure databases

ProteinModelPortaliQ45264.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini6 – 6358HTH lysR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108PTX. Bacteria.
ENOG410XTAZ. LUCA.
HOGENOMiHOG000103695.
InParanoidiQ45264.
KOiK14657.
OMAiNTDPGNI.
OrthoDBiPOG091H0FQL.
PhylomeDBiQ45264.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q45264-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVALDAVMTA RNLTAAARKI NLSQPAMSAA IARLRTYFRD
60 70 80 90 100
ELFTMRGREL VPTPGAEALA GPVREALLHI QLSIISRDAL DPAQSSRRFR
110 120 130 140 150
VILSDFMTIV FFRRIVDRMA QEAPAVRFEL LPFSDEPDDL LRRGEVDFLI
160 170 180 190 200
LPELFMSSAH PKATLFDESL VCVGCRANKQ LSRQLTFEQY ISMGHVTAKF
210 220 230 240 250
GRALRPNLEE WFLLEHGLRR RIEVVVQGFS LIPPLLLDTS RIGTMPLRLA
260 270 280 290 300
RHFEKRMPLR IIQPPLPLPT FTEALQWPSF HNTDPASIWM RRILLEEASN
310
MASGDQEPPT RRRC
Length:314
Mass (Da):35,855
Last modified:November 1, 1996 - v1
Checksum:iBB49AD4AFB9D60CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M81825 Genomic DNA. Translation: AAA26234.1.
AF322013 Genomic DNA. Translation: AAG60994.1.
BA000040 Genomic DNA. Translation: BAC47288.1.
AB073136 Genomic DNA. Translation: BAB70604.1.
RefSeqiNP_768663.1. NC_004463.1.
WP_011084820.1. NC_004463.1.

Genome annotation databases

EnsemblBacteriaiBAC47288; BAC47288; BAC47288.
GeneIDi1055523.
KEGGibja:bll2023.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M81825 Genomic DNA. Translation: AAA26234.1.
AF322013 Genomic DNA. Translation: AAG60994.1.
BA000040 Genomic DNA. Translation: BAC47288.1.
AB073136 Genomic DNA. Translation: BAB70604.1.
RefSeqiNP_768663.1. NC_004463.1.
WP_011084820.1. NC_004463.1.

3D structure databases

ProteinModelPortaliQ45264.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224911.bll2023.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC47288; BAC47288; BAC47288.
GeneIDi1055523.
KEGGibja:bll2023.

Phylogenomic databases

eggNOGiENOG4108PTX. Bacteria.
ENOG410XTAZ. LUCA.
HOGENOMiHOG000103695.
InParanoidiQ45264.
KOiK14657.
OMAiNTDPGNI.
OrthoDBiPOG091H0FQL.
PhylomeDBiQ45264.

Enzyme and pathway databases

BioCyciBJAP224911:GJEJ-2043-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiNODD1_BRADU
AccessioniPrimary (citable) accession number: Q45264
Secondary accession number(s): Q93GU3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 28, 2003
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.