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Protein

Nodulation protein D 2

Gene

nodD2

Organism
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers (By similarity).By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi23 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding, Repressor
Biological processNodulation, Transcription, Transcription regulation

Enzyme and pathway databases

BioCyciBDIA224911:G1G3J-2041-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Nodulation protein D 2
Gene namesi
Name:nodD2
Ordered Locus Names:bll2021
OrganismiBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Taxonomic identifieri224911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
Proteomesi
  • UP000002526 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057051 – 330Nodulation protein D 2Add BLAST330

Interactioni

Protein-protein interaction databases

STRINGi224911.bll2021

Structurei

3D structure databases

ProteinModelPortaliQ45263
SMRiQ45263
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 63HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Phylogenomic databases

HOGENOMiHOG000103695
InParanoidiQ45263
OMAiNATGHRM
OrthoDBiPOG091H0FQL
PhylomeDBiQ45263

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

Q45263-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRFKGLDLNL LVALDALITE RNLSSAARKI NLSQPAMSAA VARLRKHFRD
60 70 80 90 100
ELFGMRGREL VLSSRAEGLA APVREALMHI ELSIMARHPF DPARLNRRFR
110 120 130 140 150
IVLSDFVTVV LFRNVVARVT REAPAVSFEL AAPTDEHELL LRRGEVDFVI
160 170 180 190 200
RPDFFMSSTH PRAALFEERL VCVGCCTNRE LQPRLTFDRY MSMGHVAVKH
210 220 230 240 250
GGAPRTPVEH SFLTDLGPTR RIDILVQSFS MIPPLIVGTN RIGTMPLGLV
260 270 280 290 300
RHFQRTMPLR IVELPHPFPA FTEAVQWPSL HNSDPGSLWM RDILFQEATR
310 320 330
MATTQELRVT SSPEDAEPPG HFVRSVSPLP
Length:330
Mass (Da):37,249
Last modified:November 1, 1996 - v1
Checksum:iBE2AAA379EA860A4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M81825 Genomic DNA Translation: AAA26233.1
AF322013 Genomic DNA Translation: AAG60992.1
BA000040 Genomic DNA Translation: BAC47286.1
RefSeqiNP_768661.1, NC_004463.1
WP_011084818.1, NZ_CP011360.1

Genome annotation databases

EnsemblBacteriaiBAC47286; BAC47286; BAC47286
GeneIDi1055526
29270667
KEGGibja:bll2021
PATRICifig|224911.44.peg.1523

Similar proteinsi

Entry informationi

Entry nameiNODD2_BRADU
AccessioniPrimary (citable) accession number: Q45263
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 28, 2003
Last sequence update: November 1, 1996
Last modified: March 28, 2018
This is version 101 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health