Q44683 (SYR_BUCAI) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 87.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Arginine--tRNA ligase EC=6.1.1.19 Alternative name(s): Arginyl-tRNA synthetase Short name=ArgRS | ||||
| Gene names |
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| Organism | Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium) | ||||
| Taxonomic identifier | 107806 [NCBI] | ||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Buchnera |
Protein attributes
| Sequence length | 574 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Catalytic activity | ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP MF_00123 |
| Subunit structure | Monomer By similarity. HAMAP MF_00123 |
| Subcellular location | |
| Sequence similarities | Belongs to the class-I aminoacyl-tRNA synthetase family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Protein biosynthesis |
| Cellular component | Cytoplasm |
| Ligand | ATP-binding Nucleotide-binding |
| Molecular function | Aminoacyl-tRNA synthetase Ligase |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | arginyl-tRNA aminoacylation Inferred from electronic annotation. Source: InterPro |
| Cellular component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular function | ATP binding Inferred from electronic annotation. Source: UniProtKB-KW arginine-tRNA ligase activityInferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 574 | 574 | Arginine--tRNA ligase HAMAP MF_00123 | PRO_0000151539 | |||||
Regions | |||||||||
| Motif | 121 – 131 | 11 | "HIGH" region HAMAP MF_00123 | ||||||
Experimental info | |||||||||
| Sequence conflict | 9 | 1 | E → K in AAA72384. Ref.2 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS." Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H. Nature 407:81-86(2000) [PubMed: 10993077] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: APS. |
| [2] | "Partial characterization of the ribosomal RNA operons of the pea aphid endosymbionts: evolution and physiological implications." Unterman B.M., Baumann P. (In) Campbell R.K., Eikenbary R.D. (eds.); Aphid-plant genotype interactions, pp.329-350, Elsevier, Amsterdam (1990) Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-158. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | BA000003 Genomic DNA. Translation: BAB12957.1. L18933 Genomic DNA. Translation: AAA72384.1. |
| RefSeq | NP_240071.1. NC_002528.1. |
3D structure databases | |
| ProteinModelPortal | Q44683. |
| ModBase | Search... |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| EnsemblBacteria | EBBUCT00000003191; EBBUCP00000002967; EBBUCG00000003191. |
| GeneID | 1109685. |
| GenomeReviews | Gene locus BU242 in contig BA000003_GR. |
| KEGG | buc:BU242. |
| PATRIC | 21244006. VBIBucAph127364_0255. |
Phylogenomic databases | |
| GeneTree | EBGT00050000007717. |
| HOGENOM | HBG695395. |
| OMA | TRFYSNC. |
| PhylomeDB | Q44683. |
| ProtClustDB | PRK01611. |
Enzyme and pathway databases | |
| BioCyc | BSP107806:BU242-MONOMER. |
Family and domain databases | |
| HAMAP | MF_00123. Arg_tRNA_synth. [Tree] |
| InterPro | IPR001412. aa-tRNA-synth_I_CS. IPR001278. Arg-tRNA-synth_Ia. IPR015945. Arg-tRNA-synth_Ia_core. IPR005148. Arg-tRNA-synth_N. IPR008909. DALR_anticod-bd. IPR014729. Rossmann-like_a/b/a_fold. IPR009080. tRNAsynth_1a_anticodon-bd. [Graphical view] |
| Gene3D | G3DSA:3.30.1360.70. Arg-tRNA-synth_Ic_N. 1 hit. G3DSA:3.40.50.620. Rossmann-like_a/b/a_fold. 1 hit. |
| KO | K01887. |
| PANTHER | PTHR11956. Arg_tRNA-synt_1c. 1 hit. |
| Pfam | PF03485. Arg_tRNA_synt_N. 1 hit. PF05746. DALR_1. 1 hit. PF00750. tRNA-synt_1d. 1 hit. [Graphical view] |
| PRINTS | PR01038. TRNASYNTHARG. |
| SMART | SM01016. Arg_tRNA_synt_N. 1 hit. SM00836. DALR_1. 1 hit. [Graphical view] |
| SUPFAM | SSF55190. Arg-tRNA-synth_Ic_N. 1 hit. SSF47323. tRNAsyn_1a_bind. 1 hit. |
| TIGRFAMs | TIGR00456. ArgS. 1 hit. |
| PROSITE | PS00178. AA_TRNA_LIGASE_I. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | SYR_BUCAI | ||||||||
| Accession | Primary (citable) accession number: Q44683 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| Aminoacyl-tRNA synthetases List of aminoacyl-tRNA synthetase entries |
| Buchnera aphidicola (subsp. Acyrthosiphon pisum) Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names |
| SIMILARITY comments Index of protein domains and families |

Clusters with