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Protein

Proline dehydrogenase transcriptional activator

Gene

putR

Organism
Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Transcriptional activator of the putA gene in response to proline.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi29 – 48H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Proline dehydrogenase transcriptional activator
Gene namesi
Name:putR
Synonyms:prp
Encoded oniPlasmid pAtR100 Publication
OrganismiRhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter)
Taxonomic identifieri358 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupAgrobacteriumAgrobacterium tumefaciens complex

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001117441 – 156Proline dehydrogenase transcriptional activatorAdd BLAST156

Interactioni

Protein-protein interaction databases

STRINGi1050720.Agau_L101079.

Structurei

3D structure databases

ProteinModelPortaliQ44333.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini10 – 71HTH asnC-typePROSITE-ProRule annotationAdd BLAST62

Phylogenomic databases

eggNOGiENOG4105EW9. Bacteria.
COG1522. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC/Lrp_C.
IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF01037. AsnC_trans_reg. 1 hit.
PRINTSiPR00033. HTHASNC.
SMARTiView protein in SMART
SM00344. HTH_ASNC. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54909. SSF54909. 1 hit.
PROSITEiView protein in PROSITE
PS00519. HTH_ASNC_1. 1 hit.
PS50956. HTH_ASNC_2. 1 hit.

Sequencei

Sequence statusi: Complete.

Q44333-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANSHKTDDL DHFDLKILEA LSEDGRMSVL QLSKRVGLSK TPCQTRLKRL
60 70 80 90 100
VDEGYILGFR AVLNPQKLGV DHIAFAEVKL SDTREKALEE FNTAVRKIKE
110 120 130 140 150
VEECHMIAGA FDYLLKVRTS DIRKYRRVLG EKISSLPSVS NTSTFVVMQS

VKETGI
Length:156
Mass (Da):17,611
Last modified:November 1, 1996 - v1
Checksum:iFFCD4E5B594C3881
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U39263 Genomic DNA. Translation: AAC43979.1.
RefSeqiWP_004432060.1. NZ_MTKI01000007.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U39263 Genomic DNA. Translation: AAC43979.1.
RefSeqiWP_004432060.1. NZ_MTKI01000007.1.

3D structure databases

ProteinModelPortaliQ44333.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi1050720.Agau_L101079.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG4105EW9. Bacteria.
COG1522. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC/Lrp_C.
IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF01037. AsnC_trans_reg. 1 hit.
PRINTSiPR00033. HTHASNC.
SMARTiView protein in SMART
SM00344. HTH_ASNC. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF54909. SSF54909. 1 hit.
PROSITEiView protein in PROSITE
PS00519. HTH_ASNC_1. 1 hit.
PS50956. HTH_ASNC_2. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiPUTR_RHIRD
AccessioniPrimary (citable) accession number: Q44333
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: November 1, 1996
Last modified: June 7, 2017
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Plasmid

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.