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Protein

Pectate lyase

Gene

ZEAMMB73_308319

Organism
Zea mays (Maize)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Eliminative cleavage of (1->4)-alpha-D-galacturonan to give oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at their non-reducing ends.UniRule annotation

Cofactori

Ca2+UniRule annotationNote: Binds 1 Ca2+ ion. Required for its activity.UniRule annotation

Pathwayi: pectin degradation

This protein is involved in step 2 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.UniRule annotation
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Pectinesterase (ZEAMMB73_849858), Pectinesterase (C5), Pectinesterase, Pectinesterase, Pectinesterase (ZEAMMB73_468099), Pectinesterase (ZEAMMB73_385301), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (ZEAMMB73_488435), Pectinesterase, Pectinesterase, Pectinesterase (ZEAMMB73_446411), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (ZEAMMB73_849858), Pectinesterase, Pectinesterase, Pectinesterase (ZEAMMB73_386621), Pectinesterase, Pectinesterase (ZEAMMB73_595859), Pectinesterase (ZEAMMB73_478263), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (ZEAMMB73_006796), Pectinesterase (ZEAMMB73_178566), Pectinesterase, Pectinesterase, Pectinesterase, Pectinesterase (ZEAMMB73_471457), Pectinesterase (ZEAMMB73_892342)
  2. Pectate lyase (ZEAMMB73_648772), Pectate lyase, Pectate lyase, Pectate lyase (ZEAMMB73_406212), Pectate lyase, Pectate lyase (ZEAMMB73_308319), Pectate lyase, Pectate lyase (ZEAMMB73_963462), Pectate lyase, Pectate lyase (ZEAMMB73_381094), Pectate lyase, Pectate lyase (ZEAMMB73_963462), Pectate lyase, Pectate lyase, Pectate lyase (ZEAMMB73_963462), Pectate lyase, Pectate lyase
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationImported

Keywords - Ligandi

CalciumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

UniPathwayiUPA00545; UER00824.

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Names & Taxonomyi

Protein namesi
Recommended name:
Pectate lyaseUniRule annotation (EC:4.2.2.2UniRule annotation)
Gene namesi
ORF Names:ZEAMMB73_308319Imported
OrganismiZea mays (Maize)Imported
Taxonomic identifieri4577 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeTripsacinaeZea
Proteomesi
  • UP000007305 Componenti: Unplaced

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 30UniRule annotationAdd BLAST30
ChainiPRO_500845208931 – 438Pectate lyaseUniRule annotationAdd BLAST408

Interactioni

Protein-protein interaction databases

STRINGi4577.GRMZM2G323418_P01.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini165 – 361Amb_allInterPro annotationAdd BLAST197

Sequence similaritiesi

Belongs to the polysaccharide lyase 1 family.UniRule annotation

Keywords - Domaini

SignalUniRule annotation

Phylogenomic databases

eggNOGiENOG410II3G. Eukaryota.
COG3866. LUCA.
HOGENOMiHOG000237948.
KOiK01728.
OMAiHGAGITM.
OrthoDBiEOG093609HZ.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR018082. AmbAllergen.
IPR007524. Pec_lyase_N.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
PF04431. Pec_lyase_N. 1 hit.
[Graphical view]
PRINTSiPR00807. AMBALLERGEN.
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.

Sequencei

Sequence statusi: Complete.

Q43862-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAVIRSRRR VSVFFYVVLA AAAAAAAAQA SNNVTSDEEY WAERAEVARS
60 70 80 90 100
RNLAAYVSDP VAATNRFNAD VLRATTRRAL ARYDGPCMAT NPIDRCWRCR
110 120 130 140 150
ADWATDRKRL AQCARGFGHR TVGGAAGKLY VVRDPSDDEM IIPRKGTLRH
160 170 180 190 200
AVIQDRPLWI VFARDMVIEL RQELIVNHNK TIDGRGAQVH IMFAQITLQN
210 220 230 240 250
VQNVILHNLH IHDSKAHSGG MIRDSKRHYG LRTRSDGDGV SVLSSSNVWI
260 270 280 290 300
DHVSMSSCSD GLIDVVNGST AITVSNSHFT DHDHVMLFGA SNDSPQDAVM
310 320 330 340 350
QVTVAFNHFG RGLVQRMPRC RYGFFHVVNN DYTHWIMYAI GGNMNPTIIS
360 370 380 390 400
QGNRFIAPDD PNAKEVTKRE YTPYKDYKEW VWKSQGDVMM NGAFFNESGG
410 420 430
QNERKYDRFD FIPAKHGRYV GQLTRFAGPL KCIVGQPC
Length:438
Mass (Da):49,139
Last modified:November 1, 1996 - v1
Checksum:i05A092D005250586
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20140 Genomic DNA. Translation: AAA16476.1.
CM000785 Genomic DNA. Translation: AFW85884.1.
PIRiS43335.
RefSeqiNP_001307412.1. NM_001320483.1.
UniGeneiZm.95716.

Genome annotation databases

EnsemblPlantsiZm00001d000216_T001; Zm00001d000216_T001; Zm00001d000216.
GeneIDi107275230.
KEGGizma:107275230.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L20140 Genomic DNA. Translation: AAA16476.1.
CM000785 Genomic DNA. Translation: AFW85884.1.
PIRiS43335.
RefSeqiNP_001307412.1. NM_001320483.1.
UniGeneiZm.95716.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4577.GRMZM2G323418_P01.

Protein family/group databases

CAZyiPL1. Polysaccharide Lyase Family 1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiZm00001d000216_T001; Zm00001d000216_T001; Zm00001d000216.
GeneIDi107275230.
KEGGizma:107275230.

Phylogenomic databases

eggNOGiENOG410II3G. Eukaryota.
COG3866. LUCA.
HOGENOMiHOG000237948.
KOiK01728.
OMAiHGAGITM.
OrthoDBiEOG093609HZ.

Enzyme and pathway databases

UniPathwayiUPA00545; UER00824.

Family and domain databases

Gene3Di2.160.20.10. 1 hit.
InterProiIPR002022. Amb_allergen_dom.
IPR018082. AmbAllergen.
IPR007524. Pec_lyase_N.
IPR012334. Pectin_lyas_fold.
IPR011050. Pectin_lyase_fold/virulence.
[Graphical view]
PfamiPF00544. Pec_lyase_C. 1 hit.
PF04431. Pec_lyase_N. 1 hit.
[Graphical view]
PRINTSiPR00807. AMBALLERGEN.
SMARTiSM00656. Amb_all. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ43862_MAIZE
AccessioniPrimary (citable) accession number: Q43862
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.