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Protein
Submitted name:

PF1 protein

Gene

PF1

Organism
Oryza sativa (Rice)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
PF1 proteinImported
Gene namesi
Name:PF1Imported
OrganismiOryza sativa (Rice)Imported
Taxonomic identifieri4530 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

PTM / Processingi

Proteomic databases

PRIDEiQ43600.

PTM databases

iPTMnetiQ43600.

Structurei

3D structure databases

ProteinModelPortaliQ43600.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini21 – 9272H15 (linker histone H1/H5 globular)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the histone H1/H5 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG410JEJ4. Eukaryota.
ENOG410YQM8. LUCA.
HOGENOMiHOG000005795.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR005818. Histone_H1/H5_H15.
IPR000116. HMGA.
IPR031059. HMGA_plant.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PANTHERiPTHR11467:SF29. PTHR11467:SF29. 1 hit.
PfamiPF00538. Linker_histone. 1 hit.
[Graphical view]
PRINTSiPR00929. ATHOOK.
PR00930. HIGHMOBLTYIY.
SMARTiSM00384. AT_hook. 4 hits.
SM00526. H15. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51504. H15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q43600-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATEEDASTM AAAEADPKPA ATPSYPEMIL AAIEALDDRN GSNKTAISQH
60 70 80 90 100
IEGKYEGLLP PAHPSLLTAH LARMKQTGEL AFSKNNYFRG DDPSLPPKRG
110 120 130 140 150
RGRPPKPKDA AAAAAAPAPA PAAPAASSPR PRGRPPKPKD PLAEAVAKAT
160 170 180 190 200
SGMPRARGRP PKKAKVEQED PIGAPAAASA PAAAAEAAPP VKRGRGRPPK
210
VRPAAPVGEP AAA
Length:213
Mass (Da):21,753
Last modified:November 1, 1996 - v1
Checksum:iE51FFA28F5D5FB61
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L24390 mRNA. Translation: AAA33914.1.
PIRiT03931.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L24390 mRNA. Translation: AAA33914.1.
PIRiT03931.

3D structure databases

ProteinModelPortaliQ43600.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

iPTMnetiQ43600.

Proteomic databases

PRIDEiQ43600.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410JEJ4. Eukaryota.
ENOG410YQM8. LUCA.
HOGENOMiHOG000005795.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR005818. Histone_H1/H5_H15.
IPR000116. HMGA.
IPR031059. HMGA_plant.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PANTHERiPTHR11467:SF29. PTHR11467:SF29. 1 hit.
PfamiPF00538. Linker_histone. 1 hit.
[Graphical view]
PRINTSiPR00929. ATHOOK.
PR00930. HIGHMOBLTYIY.
SMARTiSM00384. AT_hook. 4 hits.
SM00526. H15. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51504. H15. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "PF1: an A-T hook-containing DNA binding protein from rice that interacts with a functionally defined d(AT)-rich element in the oat phytochrome A3 gene promoter."
    Nieto-Sotelo J., Ichida A., Quail P.H.
    Plant Cell 6:287-301(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: ShootImported.

Entry informationi

Entry nameiQ43600_ORYSA
AccessioniPrimary (citable) accession number: Q43600
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 98 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.