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Protein
Submitted name:

Uncharacterized protein

Gene

unknown

Organism
Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Submitted name:
Unknown proteinImported
Gene namesi
Name:unknownImported
OrganismiSolanum lycopersicum (Tomato) (Lycopersicon esculentum)
Taxonomic identifieri4081 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeSolanoideaeSolaneaeSolanumLycopersicon
Proteomesi
  • UP000004994 Componenti: Chromosome 1

Subcellular locationi

  • Nucleus SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi4081.Solyc01g009860.2.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini14 – 163150NACInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains NAC domain.SAAS annotation

Phylogenomic databases

eggNOGiENOG410IK0N. Eukaryota.
ENOG410YED8. LUCA.
OMAiDDHEEST.

Family and domain databases

InterProiIPR003441. NAC-dom.
[Graphical view]
PfamiPF02365. NAM. 1 hit.
[Graphical view]
SUPFAMiSSF101941. SSF101941. 1 hit.
PROSITEiPS51005. NAC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q43521-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKVNFLKNG VLRLPPGFRF RPTDEELVVQ YLKRKVFSFP LPASIIPEVE
60 70 80 90 100
VYKSDPWDLP GDMEQEKYFF STKEVKYPNG NRSNRATNSG YWKATGIDKQ
110 120 130 140 150
IILRGRQQQQ QLIGLKKTLV FYRGKSPHGC RTNWIMHEYR LANLESNYHP
160 170 180 190 200
IQGNWVICRI FLKKRGNTKN KEENMTTHDE VRNREIDKNS PVVSVKMSSR
210 220 230 240 250
DSEALASANS ELKKKASIIF YDFMGRNNSN GVAASTSSSG ITDLTTTNEE
260 270
SDDHEESTSS FNNFTTFKRK IN
Length:272
Mass (Da):31,335
Last modified:November 1, 1996 - v1
Checksum:i54209238795A461D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z75524 mRNA. Translation: CAA99760.1.
PIRiT07182.
RefSeqiNP_001233811.1. NM_001246882.1.
UniGeneiLes.13895.

Genome annotation databases

EnsemblPlantsiSolyc01g009860.2.1; Solyc01g009860.2.1; Solyc01g009860.2.
GeneIDi100147720.
GrameneiSolyc01g009860.2.1; Solyc01g009860.2.1; Solyc01g009860.2.
KEGGisly:100147720.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z75524 mRNA. Translation: CAA99760.1.
PIRiT07182.
RefSeqiNP_001233811.1. NM_001246882.1.
UniGeneiLes.13895.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4081.Solyc01g009860.2.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiSolyc01g009860.2.1; Solyc01g009860.2.1; Solyc01g009860.2.
GeneIDi100147720.
GrameneiSolyc01g009860.2.1; Solyc01g009860.2.1; Solyc01g009860.2.
KEGGisly:100147720.

Phylogenomic databases

eggNOGiENOG410IK0N. Eukaryota.
ENOG410YED8. LUCA.
OMAiDDHEEST.

Family and domain databases

InterProiIPR003441. NAC-dom.
[Graphical view]
PfamiPF02365. NAM. 1 hit.
[Graphical view]
SUPFAMiSSF101941. SSF101941. 1 hit.
PROSITEiPS51005. NAC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Cloning and characterization of tomato leaf senescence-related cDNAs."
    John I., Hackett R., Cooper W., Drake R., Farrell A., Grierson D.
    Plant Mol. Biol. 33:641-651(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: LeafImported.
  2. "A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing."
    Budiman M.A., Mao L., Wood T.C., Wing R.A.
    Genome Res. 10:129-136(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Heinz 1706Imported.
  3. "Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments."
    Wang Y., van der Hoeven R.S., Nielsen R., Mueller L.A., Tanksley S.D.
    Theor. Appl. Genet. 112:72-84(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Heinz 1706Imported.
  4. EnsemblPlants
    Submitted (JUN-2015) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: cv. Heinz 1706Imported.

Entry informationi

Entry nameiQ43521_SOLLC
AccessioniPrimary (citable) accession number: Q43521
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.