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Q43009

- SUS3_ORYSJ

UniProt

Q43009 - SUS3_ORYSJ

Protein

Sucrose synthase 3

Gene

SUS3

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 87 (01 Oct 2014)
      Sequence version 2 (27 Jun 2006)
      Previous versions | rss
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    Functioni

    Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways.By similarity

    Catalytic activityi

    NDP-glucose + D-fructose = NDP + sucrose.

    GO - Molecular functioni

    1. sucrose synthase activity Source: UniProtKB-EC

    GO - Biological processi

    1. biosynthetic process Source: InterPro
    2. sucrose metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Protein family/group databases

    CAZyiGT4. Glycosyltransferase Family 4.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Sucrose synthase 3 (EC:2.4.1.13)
    Short name:
    OsSUS3
    Short name:
    RSs3
    Alternative name(s):
    Sucrose-UDP glucosyltransferase 3
    Gene namesi
    Name:SUS3
    Synonyms:RSS3, RSUS3
    Ordered Locus Names:Os07g0616800, LOC_Os07g42490
    ORF Names:B1056G08.118, OsJ_25133, P0552F09.101
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 7

    Organism-specific databases

    GrameneiQ43009.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 816816Sucrose synthase 3PRO_0000204657Add
    BLAST

    Proteomic databases

    PaxDbiQ43009.
    PRIDEiQ43009.

    Expressioni

    Tissue specificityi

    Expressed in parenchymatous tissues, aleurone layers and cell surrounding the vascular tissue in seeds (at protein level). Predominantly expressed in caryopses.2 Publications

    Developmental stagei

    Not expressed in seed development before 3 days after pollination (DAP), reaches a peak at 6 DAP and then decreases slightly (at protein level). In the caryopse, expressed specifically from the early to middle storage stage.3 Publications

    Structurei

    3D structure databases

    ProteinModelPortaliQ43009.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni280 – 757478GT-B glycosyltransferaseBy similarityAdd
    BLAST

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG0438.
    HOGENOMiHOG000240125.
    KOiK00695.
    OMAiYQNDKAS.

    Family and domain databases

    InterProiIPR001296. Glyco_trans_1.
    IPR000368. Sucrose_synth.
    IPR012820. Sucrose_synthase_pln/cyn.
    [Graphical view]
    PfamiPF00534. Glycos_transf_1. 1 hit.
    PF00862. Sucrose_synth. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR02470. sucr_synth. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q43009-1 [UniParc]FASTAAdd to Basket

    « Hide

    MGETTGERAL TRLHSMRERI GDSLSAHTNE LVAVFSRLVN QGKGMLQPHQ    50
    IIAEYNAAIP EGEREKLKDS ALEDVLRGAQ EAIVIPPWIA LAIRPRPGVW 100
    EYLRINVSQL GVEELSVPEY LQFKEQLVDG STQNNFVLEL DFEPFNASFP 150
    RPSLSKSIGN GVQFLNRHLS SKLFHDKESM YPLLNFLRAH NYKGMTMMLN 200
    DRIRSLDALQ GALRKAEKHL AGITADTPYS EFHHRFQELG LEKGWGDCAQ 250
    RVRETIHLLL DLLEAPEPSA LEKFLGTIPM VFNVVILSPH GYFAQANVLG 300
    YPDTGGQVVY ILDQVRAMEN EMLLRIKQQG LNITPRILIV TRLLPDAHGT 350
    TCGQRLEKVL GTEHTHILRV PFRTENGTVR KWISRFEVWP YLETYTDDVA 400
    HEISGELQAT PDLIIGNYSD GNLVACLLAH KLGVTHCTIA HALEKTKYPN 450
    SDLYWKKFED HYHFSCQFTA DLIAMNHADF IITSTFQEIA GNKETVGQYE 500
    SHMAFTMPGL YRVVHGIDVF DPKFNIVSPG ADMSIYFPFT ESQKRLTSLH 550
    LEIEELLFSD VENTEHKFVL KDKKKPIIFS MARLDHVKNL TGLVELYGRN 600
    PRLQELVNLV VVCGDHGKES KDKEEQAEFK KMFNLIEQYN LNGHIRWISA 650
    QMNRVRNGEL YRYICDMRGA FVQPALYEAF GLTVIEAMTC GLPTFATAYG 700
    GPAEIIVHGV SGYHIDPYQN DKASALLVEF FEKCQEDPNH WIKISQGGLQ 750
    RIEEKYTWKL YSERLMTLSG VYGFWKYVTN LDRRETRRYL EMLYALKYRK 800
    MATTVPLAIE GEASTK 816
    Length:816
    Mass (Da):93,112
    Last modified:June 27, 2006 - v2
    Checksum:i8A81C82705AD4831
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti11 – 111T → N in AAC41682. (PubMed:9063969)Curated
    Sequence conflicti425 – 4251A → R in AAC41682. (PubMed:9063969)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L03366 Genomic DNA. Translation: AAC41682.1.
    EF122474 mRNA. Translation: ABL74561.1.
    HQ895721 mRNA. Translation: AEX32876.1.
    AP004308 Genomic DNA. Translation: BAC16012.1.
    AP004988 Genomic DNA. Translation: BAC21489.1.
    AP008213 Genomic DNA. Translation: BAF22192.1.
    CM000144 Genomic DNA. Translation: EAZ40663.1.
    AK100306 mRNA. Translation: BAG94543.1.
    RefSeqiNP_001060278.1. NM_001066813.1.
    UniGeneiOs.9860.

    Genome annotation databases

    EnsemblPlantsiOS07T0616800-01; OS07T0616800-01; OS07G0616800.
    GeneIDi4343910.
    KEGGiosa:4343910.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    L03366 Genomic DNA. Translation: AAC41682.1 .
    EF122474 mRNA. Translation: ABL74561.1 .
    HQ895721 mRNA. Translation: AEX32876.1 .
    AP004308 Genomic DNA. Translation: BAC16012.1 .
    AP004988 Genomic DNA. Translation: BAC21489.1 .
    AP008213 Genomic DNA. Translation: BAF22192.1 .
    CM000144 Genomic DNA. Translation: EAZ40663.1 .
    AK100306 mRNA. Translation: BAG94543.1 .
    RefSeqi NP_001060278.1. NM_001066813.1.
    UniGenei Os.9860.

    3D structure databases

    ProteinModelPortali Q43009.
    ModBasei Search...
    MobiDBi Search...

    Protein family/group databases

    CAZyi GT4. Glycosyltransferase Family 4.

    Proteomic databases

    PaxDbi Q43009.
    PRIDEi Q43009.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS07T0616800-01 ; OS07T0616800-01 ; OS07G0616800 .
    GeneIDi 4343910.
    KEGGi osa:4343910.

    Organism-specific databases

    Gramenei Q43009.

    Phylogenomic databases

    eggNOGi COG0438.
    HOGENOMi HOG000240125.
    KOi K00695.
    OMAi YQNDKAS.

    Family and domain databases

    InterProi IPR001296. Glyco_trans_1.
    IPR000368. Sucrose_synth.
    IPR012820. Sucrose_synthase_pln/cyn.
    [Graphical view ]
    Pfami PF00534. Glycos_transf_1. 1 hit.
    PF00862. Sucrose_synth. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR02470. sucr_synth. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete structures of three rice sucrose synthase isogenes and differential regulation of their expressions."
      Huang J.W., Chen J.T., Yu W.P., Shyur L.F., Wang A.Y., Sung H.Y., Lee P.D., Su J.C.
      Biosci. Biotechnol. Biochem. 60:233-239(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: cv. Tainung 67.
      Tissue: Leaf and Root.
    2. "Molecular cloning of sucrose synthase 3 genes in rice seeds."
      Yoon U.H., Kim Y.H.
      Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA].
      Strain: cv. Ilpoombyeo.
      Tissue: Seed.
    3. "Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane."
      Cho J.I., Kim H.B., Kim C.Y., Hahn T.R., Jeon J.S.
      Mol. Cells 31:553-561(2011) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA], GENE FAMILY, DEVELOPMENTAL STAGE.
      Strain: cv. Nipponbare.
    4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    5. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    6. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    7. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    8. "Differentially and developmentally regulated expression of three rice sucrose synthase genes."
      Wang A.-Y., Kao M.-H., Yang W.-H., Sayion Y., Liu L.-F., Lee P.-D., Su J.-C.
      Plant Cell Physiol. 40:800-807(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
    9. "Expression patterns of genes encoding carbohydrate-metabolizing enzymes and their relationship to grain filling in rice (Oryza sativa L.): comparison of caryopses located at different positions in a panicle."
      Ishimaru T., Hirose T., Matsuda T., Goto A., Takahashi K., Sasaki H., Terao T., Ishii R., Ohsugi R., Yamagishi T.
      Plant Cell Physiol. 46:620-628(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: DEVELOPMENTAL STAGE.
    10. "An expression analysis profile for the entire sucrose synthase gene family in rice."
      Hirose T., Scofield G.N., Terao T.
      Plant Sci. 174:534-543(2008)
      Cited for: GENE FAMILY, TISSUE SPECIFICITY.

    Entry informationi

    Entry nameiSUS3_ORYSJ
    AccessioniPrimary (citable) accession number: Q43009
    Secondary accession number(s): H6TFZ2, Q0D4N1, Q8GS23
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 15, 1998
    Last sequence update: June 27, 2006
    Last modified: October 1, 2014
    This is version 87 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3