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Protein

Sucrose synthase 3

Gene

SUS3

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Sucrose-cleaving enzyme that provides UDP-glucose and fructose for various metabolic pathways.By similarity

Catalytic activityi

NDP-glucose + D-fructose = NDP + sucrose.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BRENDAi2.4.1.13. 4460.

Protein family/group databases

CAZyiGT4. Glycosyltransferase Family 4.

Names & Taxonomyi

Protein namesi
Recommended name:
Sucrose synthase 3 (EC:2.4.1.13)
Short name:
OsSUS3
Short name:
RSs3
Alternative name(s):
Sucrose-UDP glucosyltransferase 3
Gene namesi
Name:SUS3
Synonyms:RSS3, RSUS3
Ordered Locus Names:Os07g0616800, LOC_Os07g42490
ORF Names:B1056G08.118, OsJ_25133, P0552F09.101
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763 Componenti: Chromosome 7

Organism-specific databases

GrameneiQ43009.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 816816Sucrose synthase 3PRO_0000204657Add
BLAST

Proteomic databases

PaxDbiQ43009.
PRIDEiQ43009.

Expressioni

Tissue specificityi

Expressed in parenchymatous tissues, aleurone layers and cell surrounding the vascular tissue in seeds (at protein level). Predominantly expressed in caryopses.2 Publications

Developmental stagei

Not expressed in seed development before 3 days after pollination (DAP), reaches a peak at 6 DAP and then decreases slightly (at protein level). In the caryopse, expressed specifically from the early to middle storage stage.3 Publications

Structurei

3D structure databases

ProteinModelPortaliQ43009.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni280 – 757478GT-B glycosyltransferaseBy similarityAdd
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0438.
HOGENOMiHOG000240125.
InParanoidiQ43009.
KOiK00695.
OMAiHWIKISQ.

Family and domain databases

InterProiIPR001296. Glyco_trans_1.
IPR000368. Sucrose_synth.
IPR012820. Sucrose_synthase_pln/cyn.
[Graphical view]
PfamiPF00534. Glycos_transf_1. 1 hit.
PF00862. Sucrose_synth. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02470. sucr_synth. 1 hit.

Sequencei

Sequence statusi: Complete.

Q43009-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGETTGERAL TRLHSMRERI GDSLSAHTNE LVAVFSRLVN QGKGMLQPHQ
60 70 80 90 100
IIAEYNAAIP EGEREKLKDS ALEDVLRGAQ EAIVIPPWIA LAIRPRPGVW
110 120 130 140 150
EYLRINVSQL GVEELSVPEY LQFKEQLVDG STQNNFVLEL DFEPFNASFP
160 170 180 190 200
RPSLSKSIGN GVQFLNRHLS SKLFHDKESM YPLLNFLRAH NYKGMTMMLN
210 220 230 240 250
DRIRSLDALQ GALRKAEKHL AGITADTPYS EFHHRFQELG LEKGWGDCAQ
260 270 280 290 300
RVRETIHLLL DLLEAPEPSA LEKFLGTIPM VFNVVILSPH GYFAQANVLG
310 320 330 340 350
YPDTGGQVVY ILDQVRAMEN EMLLRIKQQG LNITPRILIV TRLLPDAHGT
360 370 380 390 400
TCGQRLEKVL GTEHTHILRV PFRTENGTVR KWISRFEVWP YLETYTDDVA
410 420 430 440 450
HEISGELQAT PDLIIGNYSD GNLVACLLAH KLGVTHCTIA HALEKTKYPN
460 470 480 490 500
SDLYWKKFED HYHFSCQFTA DLIAMNHADF IITSTFQEIA GNKETVGQYE
510 520 530 540 550
SHMAFTMPGL YRVVHGIDVF DPKFNIVSPG ADMSIYFPFT ESQKRLTSLH
560 570 580 590 600
LEIEELLFSD VENTEHKFVL KDKKKPIIFS MARLDHVKNL TGLVELYGRN
610 620 630 640 650
PRLQELVNLV VVCGDHGKES KDKEEQAEFK KMFNLIEQYN LNGHIRWISA
660 670 680 690 700
QMNRVRNGEL YRYICDMRGA FVQPALYEAF GLTVIEAMTC GLPTFATAYG
710 720 730 740 750
GPAEIIVHGV SGYHIDPYQN DKASALLVEF FEKCQEDPNH WIKISQGGLQ
760 770 780 790 800
RIEEKYTWKL YSERLMTLSG VYGFWKYVTN LDRRETRRYL EMLYALKYRK
810
MATTVPLAIE GEASTK
Length:816
Mass (Da):93,112
Last modified:June 27, 2006 - v2
Checksum:i8A81C82705AD4831
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti11 – 111T → N in AAC41682 (PubMed:9063969).Curated
Sequence conflicti425 – 4251A → R in AAC41682 (PubMed:9063969).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L03366 Genomic DNA. Translation: AAC41682.1.
EF122474 mRNA. Translation: ABL74561.1.
HQ895721 mRNA. Translation: AEX32876.1.
AP004308 Genomic DNA. Translation: BAC16012.1.
AP004988 Genomic DNA. Translation: BAC21489.1.
AP008213 Genomic DNA. Translation: BAF22192.1.
CM000144 Genomic DNA. Translation: EAZ40663.1.
AK100306 mRNA. Translation: BAG94543.1.
RefSeqiNP_001060278.1. NM_001066813.1.
UniGeneiOs.9860.

Genome annotation databases

EnsemblPlantsiOS07T0616800-01; OS07T0616800-01; OS07G0616800.
GeneIDi4343910.
KEGGiosa:4343910.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L03366 Genomic DNA. Translation: AAC41682.1.
EF122474 mRNA. Translation: ABL74561.1.
HQ895721 mRNA. Translation: AEX32876.1.
AP004308 Genomic DNA. Translation: BAC16012.1.
AP004988 Genomic DNA. Translation: BAC21489.1.
AP008213 Genomic DNA. Translation: BAF22192.1.
CM000144 Genomic DNA. Translation: EAZ40663.1.
AK100306 mRNA. Translation: BAG94543.1.
RefSeqiNP_001060278.1. NM_001066813.1.
UniGeneiOs.9860.

3D structure databases

ProteinModelPortaliQ43009.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiGT4. Glycosyltransferase Family 4.

Proteomic databases

PaxDbiQ43009.
PRIDEiQ43009.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS07T0616800-01; OS07T0616800-01; OS07G0616800.
GeneIDi4343910.
KEGGiosa:4343910.

Organism-specific databases

GrameneiQ43009.

Phylogenomic databases

eggNOGiCOG0438.
HOGENOMiHOG000240125.
InParanoidiQ43009.
KOiK00695.
OMAiHWIKISQ.

Enzyme and pathway databases

BRENDAi2.4.1.13. 4460.

Family and domain databases

InterProiIPR001296. Glyco_trans_1.
IPR000368. Sucrose_synth.
IPR012820. Sucrose_synthase_pln/cyn.
[Graphical view]
PfamiPF00534. Glycos_transf_1. 1 hit.
PF00862. Sucrose_synth. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02470. sucr_synth. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete structures of three rice sucrose synthase isogenes and differential regulation of their expressions."
    Huang J.W., Chen J.T., Yu W.P., Shyur L.F., Wang A.Y., Sung H.Y., Lee P.D., Su J.C.
    Biosci. Biotechnol. Biochem. 60:233-239(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. Tainung 67.
    Tissue: Leaf and Root.
  2. "Molecular cloning of sucrose synthase 3 genes in rice seeds."
    Yoon U.H., Kim Y.H.
    Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
    Strain: cv. Ilpoombyeo.
    Tissue: Seed.
  3. "Identification and characterization of the duplicate rice sucrose synthase genes OsSUS5 and OsSUS7 which are associated with the plasma membrane."
    Cho J.I., Kim H.B., Kim C.Y., Hahn T.R., Jeon J.S.
    Mol. Cells 31:553-561(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA], GENE FAMILY, DEVELOPMENTAL STAGE.
    Strain: cv. Nipponbare.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  5. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  6. "The genomes of Oryza sativa: a history of duplications."
    Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
    , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
    PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  7. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
    The rice full-length cDNA consortium
    Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  8. "Differentially and developmentally regulated expression of three rice sucrose synthase genes."
    Wang A.-Y., Kao M.-H., Yang W.-H., Sayion Y., Liu L.-F., Lee P.-D., Su J.-C.
    Plant Cell Physiol. 40:800-807(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.
  9. "Expression patterns of genes encoding carbohydrate-metabolizing enzymes and their relationship to grain filling in rice (Oryza sativa L.): comparison of caryopses located at different positions in a panicle."
    Ishimaru T., Hirose T., Matsuda T., Goto A., Takahashi K., Sasaki H., Terao T., Ishii R., Ohsugi R., Yamagishi T.
    Plant Cell Physiol. 46:620-628(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: DEVELOPMENTAL STAGE.
  10. "An expression analysis profile for the entire sucrose synthase gene family in rice."
    Hirose T., Scofield G.N., Terao T.
    Plant Sci. 174:534-543(2008)
    Cited for: GENE FAMILY, TISSUE SPECIFICITY.

Entry informationi

Entry nameiSUS3_ORYSJ
AccessioniPrimary (citable) accession number: Q43009
Secondary accession number(s): H6TFZ2, Q0D4N1, Q8GS23
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: June 27, 2006
Last modified: April 1, 2015
This is version 90 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.