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Protein

Superoxide dismutase [Mn], mitochondrial

Gene

SODA

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

Cofactori

Mn2+By similarityNote: Binds 1 Mn2+ ion per subunit.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi55ManganeseBy similarity1
Metal bindingi103ManganeseBy similarity1
Metal bindingi192ManganeseBy similarity1
Metal bindingi196ManganeseBy similarity1

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Manganese, Metal-binding

Enzyme and pathway databases

ReactomeiR-OSA-3299685. Detoxification of Reactive Oxygen Species.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Mn], mitochondrial (EC:1.15.1.1)
Gene namesi
Name:SODA
Synonyms:RMSOD1, SODAOS1
Ordered Locus Names:Os05g0323900, LOC_Os05g25850
ORF Names:OsJ_18067, P0018A03
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000059680 Componenti: Chromosome 5

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 27MitochondrionBy similarityAdd BLAST27
ChainiPRO_000003290028 – 231Superoxide dismutase [Mn], mitochondrialAdd BLAST204

Proteomic databases

PaxDbiQ43008.
PRIDEiQ43008.

Expressioni

Gene expression databases

GenevisibleiQ43008. OS.

Interactioni

Subunit structurei

Homotetramer.By similarity

Protein-protein interaction databases

STRINGi39947.LOC_Os05g25850.1.

Structurei

3D structure databases

ProteinModelPortaliQ43008.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG0876. Eukaryota.
COG0605. LUCA.
HOGENOMiHOG000013583.
InParanoidiQ43008.
KOiK04564.
OMAiWDSIGQK.
OrthoDBiEOG09360K54.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q43008-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALRTLASRK TLAAAALPLA AAAAARGVTT VALPDLPYDY GALEPAISGE
60 70 80 90 100
IMRLHHQKHH ATYVANYNKA LEQLDAAVAK GDAPAIVHLQ SAIKFNGGGH
110 120 130 140 150
VNHSIFWNNL KPISEGGGDP PHAKLGWAID EDFGSFEALV KKMSAEGAAL
160 170 180 190 200
QGSGWVWLAL DKEAKKLSVE TTANQDPLVT KGANLVPLLG IDVWEHAYYL
210 220 230
QYKNVRPDYL SNIWKVMNWK YAGEVYENAT A
Length:231
Mass (Da):24,997
Last modified:June 27, 2006 - v2
Checksum:i0FCFD08FC26325C0
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti226Y → I in AAA57130 (Ref. 3) Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19436 mRNA. Translation: AAA62657.1.
AB026725 Genomic DNA. Translation: BAA86897.1.
L34038 mRNA. Translation: AAA57130.1.
GQ848046 mRNA. Translation: ADM86859.1.
AC134346 Genomic DNA. No translation available.
AP008211 Genomic DNA. Translation: BAF17109.1.
AP014961 Genomic DNA. Translation: BAS93374.1.
CM000142 Genomic DNA. Translation: EEE63257.1.
AK104030 mRNA. Translation: BAG96380.1.
AK104160 mRNA. Translation: BAG96463.1.
PIRiT04072.
T04312.
RefSeqiXP_015640127.1. XM_015784641.1.
UniGeneiOs.10618.

Genome annotation databases

EnsemblPlantsiOS05T0323900-01; OS05T0323900-01; OS05G0323900.
GeneIDi4338417.
GrameneiOS05T0323900-01; OS05T0323900-01; OS05G0323900.
KEGGiosa:4338417.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L19436 mRNA. Translation: AAA62657.1.
AB026725 Genomic DNA. Translation: BAA86897.1.
L34038 mRNA. Translation: AAA57130.1.
GQ848046 mRNA. Translation: ADM86859.1.
AC134346 Genomic DNA. No translation available.
AP008211 Genomic DNA. Translation: BAF17109.1.
AP014961 Genomic DNA. Translation: BAS93374.1.
CM000142 Genomic DNA. Translation: EEE63257.1.
AK104030 mRNA. Translation: BAG96380.1.
AK104160 mRNA. Translation: BAG96463.1.
PIRiT04072.
T04312.
RefSeqiXP_015640127.1. XM_015784641.1.
UniGeneiOs.10618.

3D structure databases

ProteinModelPortaliQ43008.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os05g25850.1.

Proteomic databases

PaxDbiQ43008.
PRIDEiQ43008.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS05T0323900-01; OS05T0323900-01; OS05G0323900.
GeneIDi4338417.
GrameneiOS05T0323900-01; OS05T0323900-01; OS05G0323900.
KEGGiosa:4338417.

Phylogenomic databases

eggNOGiKOG0876. Eukaryota.
COG0605. LUCA.
HOGENOMiHOG000013583.
InParanoidiQ43008.
KOiK04564.
OMAiWDSIGQK.
OrthoDBiEOG09360K54.

Enzyme and pathway databases

ReactomeiR-OSA-3299685. Detoxification of Reactive Oxygen Species.

Gene expression databases

GenevisibleiQ43008. OS.

Family and domain databases

InterProiIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERiPTHR11404. PTHR11404. 1 hit.
PfamiPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSODM_ORYSJ
AccessioniPrimary (citable) accession number: Q43008
Secondary accession number(s): A0A0P0WKM7
, Q0DJ64, Q43121, Q7GCN0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 26, 2001
Last sequence update: June 27, 2006
Last modified: November 30, 2016
This is version 115 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.