Q42897 (Q42897_SOLLC) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Ubiquitin conjugating enzyme E2 EMBL CAA51821.1

Submitted name:
Uncharacterized protein EnsemblPlants Solyc12g056100.1.1

Gene names

Name:

UBC EnsemblPlants Solyc12g056100.1.1 EMBL CAA51821.1

Organism

Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [Reference proteome] EMBL CAA51821.1

Taxonomic identifier

4081 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Solanoideae › Solaneae › Solanum › Lycopersicon

Protein attributes

Sequence length	148 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the ubiquitin-conjugating enzyme family. RuleBase RU004027

Ontologies

Keywords
Biological process	Ubl conjugation pathway SAAS SAAS023313
Molecular function	Ligase SAAS SAAS023313
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	acid-amino acid ligase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q42897 [UniParc]. Last modified November 1, 1996. Version 1. Checksum: 54FE3FE92FB70C66	FASTA	148	16,522
	10 20 30 40 50 60 MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP ADSPYSGGVF LVTIHFPPDY 70 80 90 100 110 120 PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV 130 140 PEIAHMYKTD RSKYETTARS WTQKFAMG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence of a cloned tomato ubiquitin conjugating enzyme." Picton S., Gray J.E., Lowe A., Barton S.L., Grierson D. Plant Physiol. 103:1471-1472(1993) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: Mill EMBL CAA51821.1. Tissue: Friut pericarp EMBL CAA51821.1.
[2]	"A deep-coverage tomato BAC library and prospects toward development of an STC framework for genome sequencing." Budiman M.A., Mao L., Wood T.C., Wing R.A. Genome Res. 10:129-136(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Heinz 1706 EnsemblPlants Solyc12g056100.1.1.
[3]	"Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments." Wang Y., van der Hoeven R.S., Nielsen R., Mueller L.A., Tanksley S.D. Theor. Appl. Genet. 112:72-84(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Heinz 1706 EnsemblPlants Solyc12g056100.1.1.
[4]	EnsemblPlants Submitted (OCT-2012) to UniProtKB Cited for: IDENTIFICATION. Strain: cv. Heinz 1706 EnsemblPlants Solyc12g056100.1.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	X73419 mRNA. Translation: CAA51821.1.
RefSeq	NP_001234437.1. NM_001247508.1.
UniGene	Les.14651.
3D structure databases
HSSP	HSSP built from PDB template 1QCQ based on UniProtKB P15731.
SMR	Q42897. Positions 1-147.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	Solyc12g056100.1.1; Solyc12g056100.1.1; Solyc12g056100.1.
GeneID	100303774.
Family and domain databases
Gene3D	3.10.110.10. 1 hit.
InterPro	IPR000608. UBQ-conjugat_E2. IPR023313. UBQ-conjugating_AS. IPR016135. UBQ-conjugating_enzyme/RWD. [Graphical view]
Pfam	PF00179. UQ_con. 1 hit. [Graphical view]
SUPFAM	SSF54495. UBQ-conjugat/RWD-like. 1 hit.
PROSITE	PS00183. UBIQUITIN_CONJUGAT_1. 1 hit. PS50127. UBIQUITIN_CONJUGAT_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q42897_SOLLC

Accession

Primary (citable) accession number: Q42897

Entry history

Integrated into UniProtKB/TrEMBL:	November 1, 1996
Last sequence update:	November 1, 1996
Last modified:	May 1, 2013
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)