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Protein

Lipoxygenase

Gene

LoxB

Organism
Hordeum vulgare (Barley)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.UniRule annotation

Cofactori

Fe cationUniRule annotation

Pathwayi: oxylipin biosynthesis

This protein is involved in the pathway oxylipin biosynthesis, which is part of Lipid metabolism.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway oxylipin biosynthesis and in Lipid metabolism.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

DioxygenaseUniRule annotationSAAS annotation, Oxidoreductase

Keywords - Biological processi

Fatty acid biosynthesis, Fatty acid metabolism, Lipid biosynthesis, Lipid metabolism, Oxylipin biosynthesisUniRule annotation

Keywords - Ligandi

IronUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Enzyme and pathway databases

UniPathwayiUPA00382.

Names & Taxonomyi

Protein namesi
Recommended name:
LipoxygenaseUniRule annotation (EC:1.13.11.-UniRule annotation)
Gene namesi
Name:LoxBImported
OrganismiHordeum vulgare (Barley)Imported
Taxonomic identifieri4513 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladePooideaeTriticodaeTriticeaeHordeinaeHordeum

Interactioni

Protein-protein interaction databases

IntActiQ42846. 1 interaction.
STRINGi4513.MLOC_55029.1.

Structurei

3D structure databases

ProteinModelPortaliQ42846.
SMRiQ42846. Positions 21-876.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini38 – 165128PLATInterPro annotationAdd
BLAST
Domaini164 – 876713LipoxygenaseInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the lipoxygenase family.UniRule annotation
Contains PLAT domain.SAAS annotation
Contains lipoxygenase domain.SAAS annotation

Phylogenomic databases

eggNOGiENOG410IH0D. Eukaryota.
ENOG410YN4N. LUCA.

Family and domain databases

Gene3Di2.60.60.20. 1 hit.
4.10.372.10. 1 hit.
InterProiIPR000907. LipOase.
IPR013819. LipOase_C.
IPR020834. LipOase_CS.
IPR020833. LipOase_Fe_BS.
IPR001246. LipOase_plant.
IPR027433. Lipoxygenase_domain_3.
IPR001024. PLAT/LH2_dom.
[Graphical view]
PANTHERiPTHR11771. PTHR11771. 2 hits.
PfamiPF00305. Lipoxygenase. 1 hit.
PF01477. PLAT. 1 hit.
[Graphical view]
PRINTSiPR00087. LIPOXYGENASE.
PR00468. PLTLPOXGNASE.
SMARTiSM00308. LH2. 1 hit.
[Graphical view]
SUPFAMiSSF48484. SSF48484. 1 hit.
SSF49723. SSF49723. 1 hit.
PROSITEiPS00711. LIPOXYGENASE_1. 1 hit.
PS00081. LIPOXYGENASE_2. 1 hit.
PS51393. LIPOXYGENASE_3. 1 hit.
PS50095. PLAT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q42846-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLHGLVDRL TGKNKEAWKE GKIRGTAVLV KSDVLDLGDF HASLLDGVHK
60 70 80 90 100
ILGKDDGVSF RLVSATAPDP QNGSRGKVGK PAHLEEMVVT MKSTAAGESV
110 120 130 140 150
FKVTFEWDDS QGVPGAVIVR NTYRSEYLLK TLTLHGVPGK GTVVFVANSW
160 170 180 190 200
IYPNVDRLFF ANDTYLPSKM PALLVQYRQD ELNNLRGDDT TGEYKEADRV
210 220 230 240 250
YRYDYYNDLG EPDNDNPRPV LGGTQELPYP RRCRTGRPPT ETDPRSESRI
260 270 280 290 300
PKYKIKEALN IYVPRDERFG HLKLSDFLGY SLKAITEAIL PITRTYVDST
310 320 330 340 350
PKEFDSFQDI YNLYDGLLKV PDNQHLKELK NKSLQFIKKS LAVAGDDSKL
360 370 380 390 400
ALPHVIKSDQ YAWRSDEEFA REMLAAVDPV CIRRLTKFPV KKYLDPSVYG
410 420 430 440 450
DQSSTITEDQ IQLNLEDGLT VRQAMDKKRL FILDHHDNFM PFLDRINKLE
460 470 480 490 500
GNYIYASRTL LFLKADGTLK PLAIELSQPH PDGIQHGAKS TVYLPADINS
510 520 530 540 550
GVDGQIWQLA KAYASVDDSA WHQLISHWLN THAVIEPFVI ATNRQLSVVH
560 570 580 590 600
PVHKLLSPHY RDTLNINALA RTTLINAGGV FELTVFPGQY ALEMSAVVYK
610 620 630 640 650
NWKLTEQGLP DDLVKRGMAV PDESSPYGIR LLIKDYPYAV DGLVIWWAIE
660 670 680 690 700
RWVNEYLAIY YPNDGVLRAD KELEEWWKEV REVGHGDLKD ADWWPKMVTV
710 720 730 740 750
QELAKTCTTI IWVASALHAA VNFGQYPYAG YLPNRPTVSR RPMPKEGDEE
760 770 780 790 800
YEQLKEGGEA ADMVFIHTIT SQFQTILGIT LIEILSKHSS DEVYLGQRDT
810 820 830 840 850
PEWTSDAKAL EAFKRFGSRL VEIEKRILDM NKDPALKNRN GPVKMPYMLL
860 870
YPNTSDANGE KALGLTAMGI PNSVSI
Length:876
Mass (Da):98,979
Last modified:January 1, 1998 - v2
Checksum:i5EF5B57FF641B56B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L37359 mRNA. Translation: AAB60715.1.
PIRiT05943.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L37359 mRNA. Translation: AAB60715.1.
PIRiT05943.

3D structure databases

ProteinModelPortaliQ42846.
SMRiQ42846. Positions 21-876.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ42846. 1 interaction.
STRINGi4513.MLOC_55029.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410IH0D. Eukaryota.
ENOG410YN4N. LUCA.

Enzyme and pathway databases

UniPathwayiUPA00382.

Family and domain databases

Gene3Di2.60.60.20. 1 hit.
4.10.372.10. 1 hit.
InterProiIPR000907. LipOase.
IPR013819. LipOase_C.
IPR020834. LipOase_CS.
IPR020833. LipOase_Fe_BS.
IPR001246. LipOase_plant.
IPR027433. Lipoxygenase_domain_3.
IPR001024. PLAT/LH2_dom.
[Graphical view]
PANTHERiPTHR11771. PTHR11771. 2 hits.
PfamiPF00305. Lipoxygenase. 1 hit.
PF01477. PLAT. 1 hit.
[Graphical view]
PRINTSiPR00087. LIPOXYGENASE.
PR00468. PLTLPOXGNASE.
SMARTiSM00308. LH2. 1 hit.
[Graphical view]
SUPFAMiSSF48484. SSF48484. 1 hit.
SSF49723. SSF49723. 1 hit.
PROSITEiPS00711. LIPOXYGENASE_1. 1 hit.
PS00081. LIPOXYGENASE_2. 1 hit.
PS51393. LIPOXYGENASE_3. 1 hit.
PS50095. PLAT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Van Mechelen J.R.
    Submitted (JUN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ42846_HORVU
AccessioniPrimary (citable) accession number: Q42846
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: January 1, 1998
Last modified: May 11, 2016
This is version 102 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.