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Protein

4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic

Gene

DHPS1

Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).By similarity

Catalytic activityi

Pyruvate + L-aspartate-4-semialdehyde = (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinate + H2O.

Pathwayi: L-lysine biosynthesis via DAP pathway

This protein is involved in step 3 of the subpathway that synthesizes (S)-tetrahydrodipicolinate from L-aspartate.
Proteins known to be involved in the 4 steps of the subpathway in this organism are:
  1. no protein annotated in this organism
  2. no protein annotated in this organism
  3. 4-hydroxy-tetrahydrodipicolinate synthase (GLYMA_03G022300), 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic (DHPS1)
  4. no protein annotated in this organism
This subpathway is part of the pathway L-lysine biosynthesis via DAP pathway, which is itself part of Amino-acid biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes (S)-tetrahydrodipicolinate from L-aspartate, the pathway L-lysine biosynthesis via DAP pathway and in Amino-acid biosynthesis.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei74 – 741Part of a proton relay during catalysisBy similarity
Binding sitei75 – 751PyruvateBy similarity
Sitei137 – 1371Part of a proton relay during catalysisBy similarity
Active sitei161 – 1611Proton donor/acceptorBy similarity
Active sitei189 – 1891Schiff-base intermediate with substrateBy similarity
Binding sitei228 – 2281Pyruvate; via carbonyl oxygenBy similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Biological processi

Amino-acid biosynthesis, Diaminopimelate biosynthesis, Lysine biosynthesis

Keywords - Ligandi

Schiff base

Enzyme and pathway databases

UniPathwayiUPA00034; UER00017.

Names & Taxonomyi

Protein namesi
Recommended name:
4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic (EC:4.3.3.7)
Short name:
HTPA synthase
Gene namesi
Name:DHPS1
Synonyms:DAPA
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Unplaced

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini? – 3324-hydroxy-tetrahydrodipicolinate synthase, chloroplasticPRO_0000007201
Transit peptidei1 – ?ChloroplastSequence analysis

Interactioni

Protein-protein interaction databases

STRINGi3847.GLYMA18G45380.1.

Structurei

3D structure databases

ProteinModelPortaliQ42800.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DapA family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiENOG410IJ4Q. Eukaryota.
COG0329. LUCA.
InParanoidiQ42800.
KOiK01714.

Family and domain databases

CDDicd00950. DHDPS. 1 hit.
Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR005263. DapA.
IPR002220. DapA-like.
IPR020625. Schiff_base-form_aldolases_AS.
IPR020624. Schiff_base-form_aldolases_CS.
[Graphical view]
PANTHERiPTHR12128. PTHR12128. 1 hit.
PfamiPF00701. DHDPS. 1 hit.
[Graphical view]
PIRSFiPIRSF001365. DHDPS. 1 hit.
PRINTSiPR00146. DHPICSNTHASE.
SMARTiSM01130. DHDPS. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00674. dapA. 1 hit.
PROSITEiPS00665. DHDPS_1. 1 hit.
PS00666. DHDPS_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q42800-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MITNSAAVKP NFHLPMRSFE LKNRTSPEDI KALRLITAIK TPYLPDGRFD
60 70 80 90 100
LEAYDDLVNM QIGQGAEGVI VGGTTGEGQL MSWEEHIILI AHTVNCFGGK
110 120 130 140 150
IKVIGNTGSN STREAIHATE QGFAVGMHAA LHINPYYGKT SLDGMVAHFR
160 170 180 190 200
SVLSMGPTII YNVPARTGQD IPPHVIQTLA ESVNLAGVKE CVGNDRIKQY
210 220 230 240 250
TDDGIVVWSG NDDQCHDARW GYGATGVVSV ASNLVPGLMR ELMFGGVNPT
260 270 280 290 300
LNSKLLPLID WLFHMPNPIG LNTALAQLGV IRPVFRLPFV PLPVDKRIEF
310 320 330
ANLVKEIGRE HFVGNKVVEV LDDDDFFLVS RY
Length:332
Mass (Da):36,386
Last modified:November 1, 1996 - v1
Checksum:i5C7292056BB85BB9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L36436 mRNA. Translation: AAA73555.1.
PIRiS50750.
RefSeqiNP_001238299.1. NM_001251370.1.
UniGeneiGma.19780.

Genome annotation databases

GeneIDi548067.
KEGGigmx:548067.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L36436 mRNA. Translation: AAA73555.1.
PIRiS50750.
RefSeqiNP_001238299.1. NM_001251370.1.
UniGeneiGma.19780.

3D structure databases

ProteinModelPortaliQ42800.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA18G45380.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi548067.
KEGGigmx:548067.

Phylogenomic databases

eggNOGiENOG410IJ4Q. Eukaryota.
COG0329. LUCA.
InParanoidiQ42800.
KOiK01714.

Enzyme and pathway databases

UniPathwayiUPA00034; UER00017.

Family and domain databases

CDDicd00950. DHDPS. 1 hit.
Gene3Di3.20.20.70. 1 hit.
InterProiIPR013785. Aldolase_TIM.
IPR005263. DapA.
IPR002220. DapA-like.
IPR020625. Schiff_base-form_aldolases_AS.
IPR020624. Schiff_base-form_aldolases_CS.
[Graphical view]
PANTHERiPTHR12128. PTHR12128. 1 hit.
PfamiPF00701. DHDPS. 1 hit.
[Graphical view]
PIRSFiPIRSF001365. DHDPS. 1 hit.
PRINTSiPR00146. DHPICSNTHASE.
SMARTiSM01130. DHDPS. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00674. dapA. 1 hit.
PROSITEiPS00665. DHDPS_1. 1 hit.
PS00666. DHDPS_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiDAPA_SOYBN
AccessioniPrimary (citable) accession number: Q42800
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1999
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 89 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Caution

Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.