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Q42589 (NLTP1_ARATH) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 99. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Non-specific lipid-transfer protein 1
Short name=LTP 1
Gene names
Name:LTP1
Ordered Locus Names:At2g38540
ORF Names:T6A23.26
OrganismArabidopsis thaliana (Mouse-ear cress) [Reference proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length118 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues.

Subcellular location

Secreted › cell wall Ref.6.

Tissue specificity

Expressed primarily in epidermal cells.

Sequence similarities

Belongs to the plant LTP family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential
Chain26 – 11893Non-specific lipid-transfer protein 1
PRO_0000018361

Amino acid modifications

Disulfide bond29 ↔ 76 Potential
Disulfide bond39 ↔ 53 Potential
Disulfide bond54 ↔ 100 Potential
Disulfide bond74 ↔ 114 Potential

Sequences

Sequence LengthMass (Da)Tools
Q42589 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: AED716F6FDB6B33E

FASTA11811,755
        10         20         30         40         50         60 
MAGVMKLACL LLACMIVAGP ITSNAALSCG SVNSNLAACI GYVLQGGVIP PACCSGVKNL 

        70         80         90        100        110 
NSIAKTTPDR QQACNCIQGA ARALGSGLNA GRAAGIPKAC GVNIPYKIST STNCKTVR

« Hide

References

« Hide 'large scale' references
[1]"Tissue-specific expression of a gene encoding a cell wall-localized lipid transfer protein from Arabidopsis."
Thoma S., Hecht U., Kippers A., Botella J., de Vries S., Somerville C.R.
Plant Physiol. 105:35-45(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
Tissue: Shoot.
[2]"Lipid transfer proteins are encoded by a small multigene family in Arabidopsis thaliana."
Arondel V.A., Vergnolle C., Cantrel C., Kader J.-C.
Plant Sci. 157:1-12(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [MRNA].
Strain: cv. Columbia.
[3]"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana."
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. expand/collapse author list , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.
Nature 402:761-768(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[4]The Arabidopsis Information Resource (TAIR)
Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
Cited for: GENOME REANNOTATION.
Strain: cv. Columbia.
[5]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[6]"A non-specific lipid transfer protein from Arabidopsis is a cell wall protein."
Thoma S., Kaneko Y., Somerville C.R.
Plant J. 3:427-436(1993) [PubMed] [Europe PMC] [Abstract]
Cited for: SUBCELLULAR LOCATION.
[7]"Plant pathogenesis-related (PR) proteins: a focus on PR peptides."
Sels J., Mathys J., De Coninck B.M.A., Cammue B.P.A., De Bolle M.F.C.
Plant Physiol. Biochem. 46:941-950(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		M80567 Genomic DNA. Translation: AAA86765.1.
AF159798 mRNA. Translation: AAF76927.1.
AC005499 Genomic DNA. Translation: AAC67364.1.
CP002685 Genomic DNA. Translation: AEC09547.1.
AY049296 mRNA. Translation: AAK83638.1.
AY091677 mRNA. Translation: AAM10276.1.
IPIIPI00527785.
PIRC84806.
RefSeqNP_181388.1. NM_129411.3.
UniGeneAt.25225.

3D structure databases

ProteinModelPortalQ42589.
SMRQ42589. Positions 26-117.
ModBaseSearch...

Protein-protein interaction databases

MINTMINT-1339779.
STRING3702.AT2G38540.1-P.

Protein family/group databases

Allergome1085. Ara t 3.

Proteomic databases

PaxDbQ42589.
PRIDEQ42589.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsAT2G38540.1; AT2G38540.1; AT2G38540.
GeneID818436.
KEGGath:AT2G38540.

Organism-specific databases

TAIRAt2g38540.

Phylogenomic databases

eggNOGNOG254538.
HOGENOMHOG000237659.
InParanoidQ42589.
OMADRRTICG.
PhylomeDBQ42589.
ProtClustDBCLSN2683211.

Gene expression databases

GenevestigatorQ42589.
GermOnlineAT2G38540. Arabidopsis thaliana.

Family and domain databases

InterProIPR016140. Bifunc_inhib/LTP/seed_store.
IPR000528. Plant_LTP.
[Graphical view]
PfamPF00234. Tryp_alpha_amyl. 1 hit.
[Graphical view]
PRINTSPR00382. LIPIDTRNSFER.
SMARTSM00499. AAI. 1 hit.
[Graphical view]
SUPFAMSSF47699. Bifunc_inhib/LTP/seed_store. 1 hit.
PROSITEPS00597. PLANT_LTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameNLTP1_ARATH
AccessionPrimary (citable) accession number: Q42589
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: May 1, 2013
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents