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Protein
Submitted name:

High mobility group protein

Gene
N/A
Organism
Canavalia gladiata (Sword bean) (Dolichos gladiatus)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
High mobility group proteinImported
OrganismiCanavalia gladiata (Sword bean) (Dolichos gladiatus)Imported
Taxonomic identifieri3824 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaePhaseoleaeCanavalia

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini11 – 8070H15 (linker histone H1/H5 globular)InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the histone H1/H5 family.UniRule annotation

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR005818. Histone_H1/H5_H15.
IPR000116. HMGA.
IPR031059. HMGA_plant.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PANTHERiPTHR11467:SF49. PTHR11467:SF49. 1 hit.
PfamiPF02178. AT_hook. 4 hits.
PF00538. Linker_histone. 1 hit.
[Graphical view]
PRINTSiPR00929. ATHOOK.
PR00930. HIGHMOBLTYIY.
SMARTiSM00384. AT_hook. 4 hits.
SM00526. H15. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51504. H15. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q42492-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATEEVNKPP SLPPYTEMIT KALDSLNEPN GSNKSAISKY IESTCGELPD
60 70 80 90 100
GHSTLLAHHL NKMKESGELV FLKNNYMKPD PTSPPKRGRG RPPKPKVPLP
110 120 130 140 150
PGTVLSPPRP RGRPPKDPNA PTKSPKAKVS TGSGRPRGRP KKIARSAAVV
160 170
APTPGPSGRP RGRPPKVKPQ LTEVSVES
Length:178
Mass (Da):19,061
Last modified:November 1, 1996 - v1
Checksum:i4FEF6903B39F45BE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83071 mRNA. Translation: BAA11767.1.
D86595 Genomic DNA. Translation: BAA13134.1.
PIRiT09585.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D83071 mRNA. Translation: BAA11767.1.
D86595 Genomic DNA. Translation: BAA13134.1.
PIRiT09585.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR017956. AT_hook_DNA-bd_motif.
IPR005818. Histone_H1/H5_H15.
IPR000116. HMGA.
IPR031059. HMGA_plant.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PANTHERiPTHR11467:SF49. PTHR11467:SF49. 1 hit.
PfamiPF02178. AT_hook. 4 hits.
PF00538. Linker_histone. 1 hit.
[Graphical view]
PRINTSiPR00929. ATHOOK.
PR00930. HIGHMOBLTYIY.
SMARTiSM00384. AT_hook. 4 hits.
SM00526. H15. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS51504. H15. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Two genes for the high mobility group protein HMG-Y are present in the genome of Canavalia gladiata D.C."
    Yamamoto S., Minamikawa T.
    Plant Mol. Biol. 33:537-544(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: SeedImported.

Entry informationi

Entry nameiQ42492_CANGL
AccessioniPrimary (citable) accession number: Q42492
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.