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Protein

Zinc finger protein 1

Gene
N/A
Organism
Triticum aestivum (Wheat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri90 – 112C2H2-type 1PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri160 – 182C2H2-type 2PROSITE-ProRule annotationAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger protein 1
Alternative name(s):
WZF1
OrganismiTriticum aestivum (Wheat)
Taxonomic identifieri4565 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladePooideaeTriticodaeTriticeaeTriticinaeTriticum
Proteomesi
  • UP000019116 Componenti: Unassembled WGS sequence

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000478491 – 261Zinc finger protein 1Add BLAST261

Expressioni

Tissue specificityi

Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region.1 Publication

Developmental stagei

During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again.1 Publication

Gene expression databases

GenevisibleiQ42430. TA.

Structurei

3D structure databases

ProteinModelPortaliQ42430.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 2 C2H2-type zinc fingers.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri90 – 112C2H2-type 1PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri160 – 182C2H2-type 2PROSITE-ProRule annotationAdd BLAST23

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

OMAiMWDDEEE.
OrthoDBiEOG09360U2L.

Family and domain databases

Gene3Di3.30.160.60. 1 hit.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF13912. zf-C2H2_6. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q42430-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSSAMEALH ALIPEQHQLD VEAAAAVSSA TSGEESGHVL QGWAKRKRSR
60 70 80 90 100
RQRSEEENLA LCLLMLSRGG KQRVQAPQPE SFAAPVPAEF KCSVCGKSFS
110 120 130 140 150
SYQALGGHKT SHRVKQPSPP SDAAAAPLVA LPAVAAILPS AEPATSSTAA
160 170 180 190 200
SSDGATNRVH RCSICQKEFP TGQALGGHKR KHYDGGVGAA ASSTELLAAA
210 220 230 240 250
AAESEVGSTG NGSSAARAFD LNIPAVPEFV WRPCAKGKMM WEDDEEVQSP
260
LAFKKPRLLT A
Length:261
Mass (Da):27,311
Last modified:November 1, 1996 - v1
Checksum:i57A7D1496C894A54
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D16415 Genomic DNA. Translation: BAA03901.1.
D16416 mRNA. Translation: BAA03902.1.
PIRiS39045.
UniGeneiTa.103.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D16415 Genomic DNA. Translation: BAA03901.1.
D16416 mRNA. Translation: BAA03902.1.
PIRiS39045.
UniGeneiTa.103.

3D structure databases

ProteinModelPortaliQ42430.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

OMAiMWDDEEE.
OrthoDBiEOG09360U2L.

Gene expression databases

GenevisibleiQ42430. TA.

Family and domain databases

Gene3Di3.30.160.60. 1 hit.
InterProiIPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF13912. zf-C2H2_6. 2 hits.
[Graphical view]
SMARTiSM00355. ZnF_C2H2. 2 hits.
[Graphical view]
PROSITEiPS00028. ZINC_FINGER_C2H2_1. 2 hits.
PS50157. ZINC_FINGER_C2H2_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiZFP1_WHEAT
AccessioniPrimary (citable) accession number: Q42430
Entry historyi
Integrated into UniProtKB/Swiss-Prot: September 19, 2003
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.