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Protein
Submitted name:

RNA binding protein RZ-1

Gene

LOC104235736

Organism
Nicotiana sylvestris (Wood tobacco) (South American tobacco)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
RNA binding protein RZ-1Imported
Submitted name:
RNA-binding protein RZ-1Imported
Submitted name:
glycine-rich RNA-binding protein-likeImported
Gene namesi
Name:LOC104235736Imported
OrganismiNicotiana sylvestris (Wood tobacco) (South American tobacco)Imported
Taxonomic identifieri4096 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeNicotianoideaeNicotianeaeNicotiana
Proteomesi
  • UP000189701 Componenti: Genome assembly

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 84RRM (RNA recognition motif)InterPro annotationAdd BLAST79
Domaini129 – 144CCHC-typeInterPro annotationAdd BLAST16

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Family and domain databases

Gene3Di4.10.60.10. 1 hit.
InterProiView protein in InterPro
IPR000504. RRM_dom.
IPR001878. Znf_CCHC.
PfamiView protein in Pfam
PF00076. RRM_1. 1 hit.
PF00098. zf-CCHC. 1 hit.
SMARTiView protein in SMART
SM00360. RRM. 1 hit.
SM00343. ZnF_C2HC. 1 hit.
SUPFAMiSSF54928. SSF54928. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 1 hit.
PS50158. ZF_CCHC. 1 hit.

Sequencei

Sequence statusi: Complete.

Q42412-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADDEYRCFI GNLSWSTSDR GLKDAFEKFG NLVDAKVVLD KFSGRSRGFG
60 70 80 90 100
FVTFDEKRAM EDAIEAMNGV DLDGRDITVD KAQPDKGSGR DFDSDRPRDR
110 120 130 140 150
DRDRGRDRDR DRGSRDYGGG RGSGGGGDCF NCGKPGHFAR ECPSEGGRGG
160 170 180 190 200
RYGGGGGGSR SSGYGPDRNG DRYGSRSGRD GGGRGGGERF SRDRSGPYER

RSSGGSRAG
Length:209
Mass (Da):22,457
Last modified:November 1, 1996 - v1
Checksum:i72BBF5EA263569F5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D28861 mRNA. Translation: BAA06012.1.
D83696 Genomic DNA. Translation: BAA12064.1.
PIRiJC4817.
RefSeqiNP_001289534.1. NM_001302605.1.
XP_009787847.1. XM_009789545.1.
XP_009787848.1. XM_009789546.1.
XP_009787849.1. XM_009789547.1.

Genome annotation databases

GeneIDi104235736.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D28861 mRNA. Translation: BAA06012.1.
D83696 Genomic DNA. Translation: BAA12064.1.
PIRiJC4817.
RefSeqiNP_001289534.1. NM_001302605.1.
XP_009787847.1. XM_009789545.1.
XP_009787848.1. XM_009789546.1.
XP_009787849.1. XM_009789547.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi104235736.

Family and domain databases

Gene3Di4.10.60.10. 1 hit.
InterProiView protein in InterPro
IPR000504. RRM_dom.
IPR001878. Znf_CCHC.
PfamiView protein in Pfam
PF00076. RRM_1. 1 hit.
PF00098. zf-CCHC. 1 hit.
SMARTiView protein in SMART
SM00360. RRM. 1 hit.
SM00343. ZnF_C2HC. 1 hit.
SUPFAMiSSF54928. SSF54928. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 1 hit.
PS50158. ZF_CCHC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ42412_NICSY
AccessioniPrimary (citable) accession number: Q42412
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 7, 2017
This is version 79 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.