Reviewed,
UniProtKB/Swiss-Prot Q42403 (TRXH3_ARATH)
Last modified
February 9, 2010.
Version 90.
History...
Clusters with 100%,
90%,
50% identity |
 Documents (2) |
 Third-party data |
 Customize display | text xml rdf/xml gff fasta |
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: Thioredoxin H-type 3 Short name=Trx-H-3 | ||||||
| Gene names |
| ||||||
| Organism | Arabidopsis thaliana (Mouse-ear cress) [Complete proteome] | ||||||
| Taxonomic identifier | 3702 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Arabidopsis |
Protein attributes
| Sequence length | 118 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Participates in various redox reactions through the reversible oxidation of the active center dithiol to a disulfide. The H form is known to activate a number of cytosolic enzymes By similarity. |
| Subcellular location | Cytoplasm By similarity. |
| Sequence similarities | Belongs to the thioredoxin family. Plant H-type subfamily. Contains 1 thioredoxin domain. |
Ontologies
Binary interactions
Sequence annotation (Features)
Sequences
References
| « Hide 'large scale' references | |
| [1] | "Evidence for five divergent thioredoxin h sequences in Arabidopsis thaliana." Rivera-Madrid R., Mestres D., Marinho P., Jacquot J.-P., Decottignies P., Miginiac-Maslow M., Meyer Y. Proc. Natl. Acad. Sci. U.S.A. 92:5620-5624(1995) [PubMed: 7777559] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: cv. Columbia. Tissue: Callus. |
| [2] | "Intron position as an evolutionary marker of thioredoxins and thioredoxin domains." Sahrawy M., Hecht V., Lopez Jaramillo J., Chueca A., Chartier Y., Meyer Y. J. Mol. Evol. 42:422-431(1996) [PubMed: 8642611] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA]. Strain: cv. Landsberg erecta. |
| [3] | "Structural analysis of Arabidopsis thaliana chromosome 5. III. Sequence features of the regions of 1,191,918 bp covered by seventeen physically assigned P1 clones." Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N., Tabata S. DNA Res. 4:401-414(1997) [PubMed: 9501997] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [4] | "Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.  Ecker J.R.Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia. |
| [5] | "Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
| [6] | "Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs." Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J. Hoefte H.Plant J. 9:101-124(1996) [PubMed: 8580968] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 33-105. Strain: cv. Columbia. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | Z35474 mRNA. Translation: CAA84611.1. U35640 Genomic DNA. Translation: AAC49351.1. AB008264 Genomic DNA. Translation: BAB09200.1. AY059870 mRNA. Translation: AAL24352.1. AY065098 mRNA. Translation: AAL38274.1. AY093318 mRNA. Translation: AAM13317.1. AY114566 mRNA. Translation: AAM47885.1. AY085117 mRNA. Translation: AAM61671.1. Z35335 mRNA. Translation: CAA84560.1. |
| IPI | IPI00523104. |
| PIR | S58118. |
| RefSeq | NP_199112.1. |
| UniGene | At.24175 Rra.714 |
3D structure databases | |
| SMR | Q42403. Positions 2-111. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q42403. 51 interactions. |
| STRING | Q42403. |
Proteomic databases | |
| PRIDE | Q42403. |
Genome annotation databases | |
| GeneID | 834313. |
| GenomeReviews | Gene locus AT5G42980 in contig BA000015_GR. |
| KEGG | ath:AT5G42980. |
| NMPDR | fig|3702.1.peg.26032. |
Organism-specific databases | |
| TAIR | At5g42980. |
Phylogenomic databases | |
| HOGENOM | HBG493509. |
| InParanoid | Q42403. |
| OMA | MIAPTIV. |
| PhylomeDB | Q42403. |
Gene expression databases | |
| ArrayExpress | Q42403. |
| Genevestigator | Q42403. |
| GermOnline | AT5G42980. Arabidopsis thaliana. |
Family and domain databases | |
| InterPro | IPR017936. Thioredoxin-like. IPR012336. Thioredoxin-like_fold. IPR006662. Thioredoxin-like_subdom. IPR015467. Thioredoxin_core. IPR017937. Thioredoxin_CS. IPR013766. Thioredoxin_domain. IPR012335. Thioredoxin_fold. [Graphical view] |
| Gene3D | G3DSA:3.40.30.10. Thioredoxin_fold. 1 hit. |
| PANTHER | PTHR10438. Trx. 1 hit. |
| Pfam | PF00085. Thioredoxin. 1 hit. [Graphical view] |
| PRINTS | PR00421. THIOREDOXIN. |
| PROSITE | PS00194. THIOREDOXIN_1. 1 hit. PS51352. THIOREDOXIN_2. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | TRXH3_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q42403 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | PPAP (Plant Proteome Annotation Project) | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| SIMILARITY comments Index of protein domains and families |
