Q42347 (RL241_ARATH) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
60S ribosomal protein L24-1

Gene names

Name:	RPL24A
Ordered Locus Names:	At2g36620
ORF Names:	F13K3.2, F1O11.25

Organism

Arabidopsis thaliana (Mouse-ear cress)

Taxonomic identifier

3702 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis

Protein attributes

Sequence length	164 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Function	Might have an extraribosomal function in reinitiation of translation. Ref.1
Subunit structure	Interacts with the cauliflower mosaic virus transactivator TAV to form a TAV/60S complex. Ref.1
Sequence similarities	Belongs to the ribosomal protein L24e family.
Sequence caution	The sequence CAA23385.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	chloroplast Inferred from direct assay. Source: TAIR cytosolic large ribosomal subunit Inferred from direct assay. Source: TAIR plasma membrane Inferred from direct assay. Source: TAIR
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 164	164	60S ribosomal protein L24-1		PRO_0000244739
Experimental info
	Sequence conflict	44	1	N → Y Ref.6
	Sequence conflict	150	1	A → S in CAA23385. Ref.6

Sequences

	Sequence		Length	Mass (Da)
	Q42347 [UniParc]. Last modified June 27, 2006. Version 2. Checksum: BA88816244551DC0	FASTA	164	18,850
	10 20 30 40 50 60 MVLKTELCRF SGQKIYPGRG IRFIRSDSQV FLFLNSKCKR YFHNKLKPSK LCWTAMYRKQ 70 80 90 100 110 120 HKKDAAQEAV KRRRRATKKP YSRSIVGATL EVIQKKRAEK PEVRDAAREA ALREIKERIK 130 140 150 160 KTKDEKKAKK VEYASKQQKS QVKGNIPKSA APKAAKMGGG GGRR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"A plant viral 'reinitiation' factor interacts with the host translational machinery." Park H.S., Himmelbach A., Browning K.S., Hohn T., Ryabova L.A. Cell 106:723-733(2001) [PubMed: 11572778] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, INTERACTION WITH TAV.
[2]	"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana." Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V., Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S., Cronin L.A. , Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C. Nature 402:761-768(1999) [PubMed: 10617197] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia.
[3]	The Arabidopsis Information Resource (TAIR) Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases Cited for: GENOME REANNOTATION. Strain: cv. Columbia.
[4]	"Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R. Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia.
[5]	"Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
[6]	"Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs." Cooke R., Raynal M., Laudie M., Grellet F., Delseny M., Morris P.-C., Guerrier D., Giraudat J., Quigley F., Clabault G., Li Y.-F., Mache R., Krivitzky M., Gy I.J.-J., Kreis M., Lecharny A., Parmentier Y., Marbach J. , Fleck J., Clement B., Philipps G., Herve C., Bardet C., Tremousaygue D., Lescure B., Lacomme C., Roby D., Jourjon M.-F., Chabrier P., Charpenteau J.-L., Desprez T., Amselem J., Chiapello H., Hoefte H. Plant J. 9:101-124(1996) [PubMed: 8580968] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 38-164. Strain: cv. Columbia.
[7]	"The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome." Barakat A., Szick-Miranda K., Chang I.-F., Guyot R., Blanc G., Cooke R., Delseny M., Bailey-Serres J. Plant Physiol. 127:398-415(2001) [PubMed: 11598216] [Abstract] Cited for: GENE FAMILY ORGANIZATION, NOMENCLATURE.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AJ293729 mRNA. Translation: CAC01930.1. AC006282 Genomic DNA. Translation: AAD20138.2. AC006919 Genomic DNA. Translation: AAM15314.1. CP002685 Genomic DNA. Translation: AEC09274.1. AY058086 mRNA. Translation: AAL24194.1. AY072350 mRNA. Translation: AAL62342.1. AY114728 mRNA. Translation: AAM48047.1. AY085323 mRNA. Translation: AAM62554.1. F20030 mRNA. Translation: CAA23385.1. Different initiation.
IPI	IPI00522443.
PIR	F84782.
RefSeq	NP_565851.1. NM_129217.4.
UniGene	At.45956.
3D structure databases
ProteinModelPortal	Q42347.
SMR	Q42347. Positions 1-75.
ModBase	Search...
Protein-protein interaction databases
STRING	Q42347.
Proteomic databases
PRIDE	Q42347.
ProMEX	Q42347.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	AT2G36620.1; AT2G36620.1; AT2G36620.
GeneID	818234.
GenomeReviews	Gene locus AT2G36620 in contig CT485783_GR.
KEGG	ath:AT2G36620.
NMPDR	fig|3702.1.peg.10763.
Organism-specific databases
GeneFarm	256. 23.
TAIR	At2g36620.
Phylogenomic databases
eggNOG	KOG1722.
GeneTree	EPGT00050000012817.
HOGENOM	HBG600564.
InParanoid	Q42347.
OMA	CERSYLM.
PhylomeDB	Q42347.
ProtClustDB	CLSN2684901.
Gene expression databases
Genevestigator	Q42347.
GermOnline	AT2G36620. Arabidopsis thaliana.
Family and domain databases
InterPro	IPR023442. Ribosomal_L24e_CS. IPR023441. Ribosomal_L24e_dom. IPR000988. Ribosomal_L24e_rel. [Graphical view]
Gene3D	G3DSA:2.30.170.20. Ribosomal_L24E. 1 hit.
KO	K02896.
PANTHER	PTHR10792. Ribosomal_L24E. 1 hit.
Pfam	PF01246. Ribosomal_L24e. 1 hit. [Graphical view]
PROSITE	PS01073. RIBOSOMAL_L24E. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL241_ARATH

Accession

Primary (citable) accession number: Q42347
Secondary accession number(s): Q9LF73, Q9SKP1

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 27, 2006
Last sequence update:	June 27, 2006
Last modified:	November 16, 2011
This is version 67 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Plant Protein Annotation Program