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Protein

rRNA N-glycosidase

Gene
N/A
Organism
Sambucus nigra (European elder)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Endohydrolysis of the N-glycosidic bond at one specific adenosine on the 28S rRNA.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseUniRule annotationSAAS annotation, Protein synthesis inhibitorUniRule annotationSAAS annotation, ToxinUniRule annotationSAAS annotation

Keywords - Biological processi

Plant defenseUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
rRNA N-glycosidaseUniRule annotation (EC:3.2.2.22UniRule annotation)
OrganismiSambucus nigra (European elder)Imported
Taxonomic identifieri4202 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridscampanulidsDipsacalesAdoxaceaeSambucus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525Sequence analysisAdd
BLAST
Chaini26 – 570545rRNA N-glycosidaseSequence analysisPRO_5004231708Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliQ41358.
SMRiQ41358. Positions 34-285, 315-566.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini319 – 439121Ricin B-type lectinInterPro annotationAdd
BLAST
Domaini441 – 566126Ricin B-type lectinInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosome-inactivating protein family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Family and domain databases

Gene3Di3.40.420.10. 1 hit.
4.10.470.10. 1 hit.
InterProiIPR001574. Ribosome_inactivat_prot.
IPR017988. Ribosome_inactivat_prot_CS.
IPR016138. Ribosome_inactivat_prot_sub1.
IPR016139. Ribosome_inactivat_prot_sub2.
IPR017989. Ribosome_inactivat_prot_subgr.
IPR000772. Ricin_B_lectin.
[Graphical view]
PfamiPF00652. Ricin_B_lectin. 2 hits.
PF00161. RIP. 1 hit.
[Graphical view]
PRINTSiPR00396. SHIGARICIN.
SMARTiSM00458. RICIN. 2 hits.
[Graphical view]
SUPFAMiSSF50370. SSF50370. 2 hits.
SSF56371. SSF56371. 1 hit.
PROSITEiPS50231. RICIN_B_LECTIN. 2 hits.
PS00275. SHIGA_RICIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q41358-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRLVAKLLYL AVLAICGLGI HGALTHPRVT PPVYPSVSFN LTGADTYEPF
60 70 80 90 100
LRALQEKVIL GNHTAFDLPV LNPESQVSDS NRFVLVPLTN PSGDTVTLAI
110 120 130 140 150
DVVNLYVVAF SSNGKSYFFS GSTAVQRDNL FVDTTQEELN FTGNYTSLER
160 170 180 190 200
QVGFGRVYIP LGPKSLDQAI SSLRTYTLTA GDTKPLARGL LVVIQMVSEA
210 220 230 240 250
ARFRYIELRI RTSITDASEF TPDLLMLSME NNWSSMSSEI QQAQPGGIFA
260 270 280 290 300
GVVQLRDERN NSIEVTNFRR LFELTYIAVL LYGCAPVTSS SYSNNAIDAQ
310 320 330 340 350
IIKMPVFRGG EYEKVCSVVE VTRRISGWDG LCVDVRYGHY IDGNPVQLRP
360 370 380 390 400
CGNECNQLWT FRTDGTIRWL GKCLTASSSV MIYDCNTVPP EATKWVVSID
410 420 430 440 450
GTITNPHSGL VLTAPQAAEG TALSLENNIH AARQGWTVGD VEPLVTFIVG
460 470 480 490 500
YKQMCLRENG ENNFVWLEDC VLNRVQQEWA LYGDGTIRVN SNRSLCVTSE
510 520 530 540 550
DHEPSDLIVI LKCEGSGNQR WVFNTNGTIS NPNAKLLMDV AQRDVSLRKI
560 570
ILYRPTGNPN QQWITTTHPA
Length:570
Mass (Da):63,102
Last modified:November 1, 1996 - v1
Checksum:iA059E2A3E868B868
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U27122 mRNA. Translation: AAC49158.1.
PIRiS62627.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U27122 mRNA. Translation: AAC49158.1.
PIRiS62627.

3D structure databases

ProteinModelPortaliQ41358.
SMRiQ41358. Positions 34-285, 315-566.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

Gene3Di3.40.420.10. 1 hit.
4.10.470.10. 1 hit.
InterProiIPR001574. Ribosome_inactivat_prot.
IPR017988. Ribosome_inactivat_prot_CS.
IPR016138. Ribosome_inactivat_prot_sub1.
IPR016139. Ribosome_inactivat_prot_sub2.
IPR017989. Ribosome_inactivat_prot_subgr.
IPR000772. Ricin_B_lectin.
[Graphical view]
PfamiPF00652. Ricin_B_lectin. 2 hits.
PF00161. RIP. 1 hit.
[Graphical view]
PRINTSiPR00396. SHIGARICIN.
SMARTiSM00458. RICIN. 2 hits.
[Graphical view]
SUPFAMiSSF50370. SSF50370. 2 hits.
SSF56371. SSF56371. 1 hit.
PROSITEiPS50231. RICIN_B_LECTIN. 2 hits.
PS00275. SHIGA_RICIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ41358_SAMNI
AccessioniPrimary (citable) accession number: Q41358
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 17, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.