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Protein

Chlorophyll a-b binding protein, chloroplastic

Gene

lhaB

Organism
Pisum sativum (Garden pea)
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi67Magnesium (chlorophyll b 1 axial ligand); via carbonyl oxygenCombined sources1
Metal bindingi106Magnesium (chlorophyll a 2 axial ligand)Combined sources1
Metal bindingi109Magnesium (chlorophyll a 4 axial ligand); via tele nitrogenCombined sources1
Binding sitei126Chlorophyll a 12 (covalent)Combined sources1
Metal bindingi156Magnesium (chlorophyll a 13 axial ligand)Combined sources1
Metal bindingi164Magnesium (chlorophyll a 3 axial ligand)Combined sources1
Metal bindingi164Magnesium (chlorophyll a 6 axial ligand)Combined sources1
Metal bindingi180Magnesium (chlorophyll b 5 axial ligand)Combined sources1
Metal bindingi221Magnesium (chlorophyll a 8 axial ligand)Combined sources1
Metal bindingi224Magnesium (chlorophyll a 17 axial ligand)Combined sources1
Metal bindingi224Magnesium (chlorophyll a 5 axial ligand)Combined sources1
Metal bindingi238Magnesium (chlorophyll a 19 axial ligand)Combined sources1
Metal bindingi239Magnesium (chlorophyll a 20 axial ligand); via pros nitrogenCombined sources1
Metal bindingi253Magnesium (chlorophyll a 14 axial ligand); via tele nitrogenCombined sources1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Photosynthesis

Keywords - Ligandi

ChlorophyllUniRule annotationSAAS annotation, Chromophore, MagnesiumSAAS annotation, Metal-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Chlorophyll a-b binding protein, chloroplasticUniRule annotation
Gene namesi
Name:lhaBImported
OrganismiPisum sativum (Garden pea)Imported
Taxonomic identifieri3888 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaeFabeaePisum

Subcellular locationi

  • Plastidchloroplast thylakoid membrane UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

ChloroplastUniRule annotationSAAS annotation, Membrane, Photosystem IUniRule annotationSAAS annotation, Photosystem IIUniRule annotation, Plastid, ThylakoidUniRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PRIDEiQ41038.

Interactioni

Subunit structurei

The LHC complex consists of chlorophyll a-b binding proteins.SAAS annotation

Protein-protein interaction databases

DIPiDIP-60294N.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2O01X-ray3.40274-259[»]
2WSCX-ray3.3021-269[»]
2WSEX-ray3.4921-269[»]
2WSFX-ray3.4821-269[»]
3LW5X-ray3.30294-269[»]
4RKUX-ray3.00259-257[»]
4XK8X-ray2.802/762-267[»]
4Y28X-ray2.8021-269[»]
ProteinModelPortaliQ41038.
SMRiQ41038.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ41038.

Family & Domainsi

Sequence similaritiesi

Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.UniRule annotationSAAS annotation

Keywords - Domaini

TransmembraneSAAS annotation

Family and domain databases

Gene3Di1.10.3460.10. 1 hit.
InterProiIPR001344. Chloro_AB-bd_pln.
IPR022796. Chloroa_b-bind.
IPR023329. Chlorophyll_a/b-bd_dom.
[Graphical view]
PANTHERiPTHR21649. PTHR21649. 1 hit.
PfamiPF00504. Chloroa_b-bind. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q41038-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASACASSAI AAVAISTPSS QKNGSPSGTS KAFLGRKLKV NSSTASPSRV
60 70 80 90 100
RSTSTVCTVA EPDRPLWFPG STPPPWLDGS LPGDFGFDPL GLGSDPESLR
110 120 130 140 150
WNVQAELVHS RWAMLGAAGI FIPEFLTKLG ILNTPSWYTA GEQEYFTDTT
160 170 180 190 200
TLFIVELVFI GWAEGRRWAD ILNPGCVNTD PIFPNNKLTG TDVGYPGGLW
210 220 230 240 250
FDPLGWGSAS PQKLKELRTK EIKNGRLAML AVMGAWFQHI YTGTGPIDNL
260
FAHLADPGHA TIFAAFTPK
Length:269
Mass (Da):28,888
Last modified:November 1, 1996 - v1
Checksum:iDC007AD3C780AD06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X81962 mRNA. Translation: CAA57492.1.
PIRiS60608.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X81962 mRNA. Translation: CAA57492.1.
PIRiS60608.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2O01X-ray3.40274-259[»]
2WSCX-ray3.3021-269[»]
2WSEX-ray3.4921-269[»]
2WSFX-ray3.4821-269[»]
3LW5X-ray3.30294-269[»]
4RKUX-ray3.00259-257[»]
4XK8X-ray2.802/762-267[»]
4Y28X-ray2.8021-269[»]
ProteinModelPortaliQ41038.
SMRiQ41038.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-60294N.

Proteomic databases

PRIDEiQ41038.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ41038.

Family and domain databases

Gene3Di1.10.3460.10. 1 hit.
InterProiIPR001344. Chloro_AB-bd_pln.
IPR022796. Chloroa_b-bind.
IPR023329. Chlorophyll_a/b-bd_dom.
[Graphical view]
PANTHERiPTHR21649. PTHR21649. 1 hit.
PfamiPF00504. Chloroa_b-bind. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ41038_PEA
AccessioniPrimary (citable) accession number: Q41038
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 30, 2016
This is version 97 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.