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Protein
Submitted name:

AT1 protein

Gene

AT1

Organism
Oryza sativa (Rice)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
AT1 proteinImported
Gene namesi
Name:AT1Imported
OrganismiOryza sativa (Rice)Imported
Taxonomic identifieri4530 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza

Subcellular locationi

GO - Cellular componenti

Structurei

3D structure databases

ProteinModelPortaliQ40725.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 89H15 (linker histone H1/H5 globular)InterPro annotationAdd BLAST70

Phylogenomic databases

eggNOGiENOG410JD2Q. Eukaryota.
ENOG410Z72C. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR017956. AT_hook_DNA-bd_motif.
IPR005818. Histone_H1/H5_H15.
IPR000116. HMGA.
IPR031059. HMGA_plant.
IPR011991. WHTH_DNA-bd_dom.
PANTHERiPTHR11467:SF75. PTHR11467:SF75. 1 hit.
PfamiView protein in Pfam
PF00538. Linker_histone. 1 hit.
PRINTSiPR00929. ATHOOK.
PR00930. HIGHMOBLTYIY.
SMARTiView protein in SMART
SM00384. AT_hook. 13 hits.
SM00526. H15. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS51504. H15. 1 hit.

Sequencei

Sequence statusi: Complete.

Q40725-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVVAVASPSS APGPGAAGRP HPTYKEMILR ALKELPDPII SSRRAIAKYI
60 70 80 90 100
SDNFSGLPSH HDALLTVHLR RLRSQGLLLM SGHSYLLSTS ATAARGRGRG
110 120 130 140 150
RPPKKASSSA PPQKRGPGRP RKNTALFPVP VLEAKPGRGR PRKNPLPVAS
160 170 180 190 200
STSSAAAAAT ALSLRVKRGP GRPRKNAAAT PLRLGVKRGP GRPRKNAAAT
210 220 230 240 250
PLRLGAKRGP GRPRKNATAT PLSLGVKRGP GRPRKNAAAA ASPVAPPPAS
260 270 280 290 300
PLKRGVGRPR KNATPLVKPG PGRPSGFKRG PGRPRKNATP PVLSVPPTAA
310 320 330 340 350
AVLGVKRGRG RPRKDKPLQS WSVLSGGAAM TKRGAGRPRK KRPLEAGGVV
360 370 380 390 400
AAQVDTADGG EAGAVQNGGE VRCLLSDGAS SMGNRGPGSP RKEVLLENEP
410 420 430 440 450
TVSTLVGKRG RGRPKKEKPS AARPAETGDA KSMGIKRGRG RPRKDSSFQA
460 470 480 490 500
VFAEAAGQVS RDVTAAQPEG DADLLARKEP ETAAVVSVEN KETRPADAGG
510 520 530
VVVSEEKTSI DPVEAGSVMP CVNAEVDRMN SDLRTANP
Length:538
Mass (Da):55,827
Last modified:November 1, 1996 - v1
Checksum:iEC386FEF06EE1F8F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X88798 mRNA. Translation: CAA61276.1.
PIRiS57459.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X88798 mRNA. Translation: CAA61276.1.
PIRiS57459.

3D structure databases

ProteinModelPortaliQ40725.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiENOG410JD2Q. Eukaryota.
ENOG410Z72C. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR017956. AT_hook_DNA-bd_motif.
IPR005818. Histone_H1/H5_H15.
IPR000116. HMGA.
IPR031059. HMGA_plant.
IPR011991. WHTH_DNA-bd_dom.
PANTHERiPTHR11467:SF75. PTHR11467:SF75. 1 hit.
PfamiView protein in Pfam
PF00538. Linker_histone. 1 hit.
PRINTSiPR00929. ATHOOK.
PR00930. HIGHMOBLTYIY.
SMARTiView protein in SMART
SM00384. AT_hook. 13 hits.
SM00526. H15. 1 hit.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS51504. H15. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ40725_ORYSA
AccessioniPrimary (citable) accession number: Q40725
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 15, 2017
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.