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Protein

Guanine nucleotide-binding protein subunit beta

Gene

RGB1

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.Curated

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Transducer

Names & Taxonomyi

Protein namesi
Recommended name:
Guanine nucleotide-binding protein subunit betaCurated
Alternative name(s):
WD40 repeat-containing protein 801 Publication
Short name:
OsWD40-801 Publication
Gene namesi
Name:RGB11 Publication
Ordered Locus Names:Os03g0669200Imported, LOC_Os03g46650Imported
ORF Names:OSJNBa0039O18.9
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
ProteomesiUP000000763 Componenti: Chromosome 3

Organism-specific databases

GrameneiQ40687.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 380380Guanine nucleotide-binding protein subunit betaPRO_0000127725Add
BLAST

Expressioni

Gene expression databases

ExpressionAtlasiQ40687. baseline.

Interactioni

Subunit structurei

G proteins are composed of 3 units, alpha, beta and gamma. Interacts with the gamma subunits RGG1 and RGG2.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
GPA1Q0DJ332EBI-1100119,EBI-1100098
RGG1Q75WU14EBI-1100119,EBI-1100093
RGG2Q6YXX94EBI-1100119,EBI-1100089

Protein-protein interaction databases

IntActiQ40687. 3 interactions.
STRINGi39947.LOC_Os03g46650.1.

Structurei

3D structure databases

ProteinModelPortaliQ40687.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati64 – 9431WD 1Add
BLAST
Repeati106 – 13631WD 2Add
BLAST
Repeati155 – 18632WD 3Add
BLAST
Repeati203 – 23432WD 4Add
BLAST
Repeati247 – 27731WD 5Add
BLAST
Repeati296 – 32631WD 6Add
BLAST
Repeati342 – 37231WD 7Add
BLAST

Sequence similaritiesi

Belongs to the WD repeat G protein beta family.Curated
Contains 7 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiCOG2319.
HOGENOMiHOG000176356.
InParanoidiQ40687.
KOiK04536.
OMAiRIVMRPR.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR001632. Gprotein_B.
IPR016346. Guanine_nucleotide-bd_bsu.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR19850. PTHR19850. 1 hit.
PfamiPF00400. WD40. 7 hits.
[Graphical view]
PRINTSiPR00319. GPROTEINB.
PR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 3 hits.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q40687-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASVAELKEK HAAATASVNS LRERLRQRRQ MLLDTDVERY SRTQGRTPVS
60 70 80 90 100
FNPTDLVCCR TLQGHSGKVY SLDWTPEKNW IVSASQDGRL IVWNALTSQK
110 120 130 140 150
THAIKLHCPW VMTCAFAPNG QSVACGGLDS ACSIFNLNSQ ADRDGNIPVS
160 170 180 190 200
RILTGHKGYV SSCQYVPDQE TRLITSSGDQ TCVLWDVTTG QRISIFGGEF
210 220 230 240 250
PSGHTADVLS LSINSSNSNM FVSGSCDATV RLWDIRIASR AVRTYHGHEG
260 270 280 290 300
DINSVKFFPD GQRFGTGSDD GTCRLFDVRT GHQLQVYSRE PDRNDNELPT
310 320 330 340 350
VTSIAFSISG RLLFAGYSNG DCYVWDTLLA EVVLNLGNLQ NSHEGRISCL
360 370 380
GLSSDGSALC TGSWDKNLKI WAFSGHRKIV
Length:380
Mass (Da):41,752
Last modified:November 1, 1996 - v1
Checksum:i36CE374E2A3E8EB0
GO

Sequence cautioni

The sequence BAF12777.2 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X89737 Genomic DNA. Translation: CAA61889.1.
AC133930 Genomic DNA. Translation: AAP44640.1.
DP000009 Genomic DNA. Translation: ABF98102.1.
AP008209 Genomic DNA. Translation: BAF12777.2. Sequence problems.
AK242811 mRNA. Translation: BAH01349.1.
JF712554 mRNA. Translation: AEE69019.1.
PIRiT03765.
RefSeqiNP_001050863.2. NM_001057398.2.
UniGeneiOs.88351.

Genome annotation databases

EnsemblPlantsiOS03T0669200-01; OS03T0669200-01; OS03G0669200.
GeneIDi4333680.
KEGGiosa:4333680.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X89737 Genomic DNA. Translation: CAA61889.1.
AC133930 Genomic DNA. Translation: AAP44640.1.
DP000009 Genomic DNA. Translation: ABF98102.1.
AP008209 Genomic DNA. Translation: BAF12777.2. Sequence problems.
AK242811 mRNA. Translation: BAH01349.1.
JF712554 mRNA. Translation: AEE69019.1.
PIRiT03765.
RefSeqiNP_001050863.2. NM_001057398.2.
UniGeneiOs.88351.

3D structure databases

ProteinModelPortaliQ40687.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ40687. 3 interactions.
STRINGi39947.LOC_Os03g46650.1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOS03T0669200-01; OS03T0669200-01; OS03G0669200.
GeneIDi4333680.
KEGGiosa:4333680.

Organism-specific databases

GrameneiQ40687.

Phylogenomic databases

eggNOGiCOG2319.
HOGENOMiHOG000176356.
InParanoidiQ40687.
KOiK04536.
OMAiRIVMRPR.

Gene expression databases

ExpressionAtlasiQ40687. baseline.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR020472. G-protein_beta_WD-40_rep.
IPR001632. Gprotein_B.
IPR016346. Guanine_nucleotide-bd_bsu.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PANTHERiPTHR19850. PTHR19850. 1 hit.
PfamiPF00400. WD40. 7 hits.
[Graphical view]
PRINTSiPR00319. GPROTEINB.
PR00320. GPROTEINBRPT.
SMARTiSM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS00678. WD_REPEATS_1. 3 hits.
PS50082. WD_REPEATS_2. 5 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Molecular cloning and characterization of a cDNA for the beta subunit of a G protein from rice."
    Ishikawa A., Iwasaki Y., Asahi T.
    Plant Cell Physiol. 37:223-228(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: cv. Nipponbare.
  2. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
    The rice chromosome 3 sequencing consortium
    Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
    , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
    Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "Oryza sativa full length cDNA."
    The rice full-length cDNA consortium
    Submitted (OCT-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Nipponbare.
  6. "Screening and Identifying the Interaction Proteins of RACK1 in Rice."
    Zhang D., Liang J.
    Submitted (MAR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 1-378.
    Strain: cv. Nipponbare.
  7. "Characterization of heterotrimeric G protein complexes in rice plasma membrane."
    Kato C., Mizutani T., Tamaki H., Kumagai H., Kamiya T., Hirobe A., Fujisawa Y., Kato H., Iwasaki Y.
    Plant J. 38:320-331(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: SUBUNIT, INTERACTION WITH RGG1 AND RGG2, SUBCELLULAR LOCATION.
  8. "Genomic survey, expression profile and co-expression network analysis of OsWD40 family in rice."
    Ouyang Y., Huang X., Lu Z., Yao J.
    BMC Genomics 13:100-100(2012) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENE FAMILY, NOMENCLATURE.

Entry informationi

Entry nameiGBB_ORYSJ
AccessioniPrimary (citable) accession number: Q40687
Secondary accession number(s): F6M2M6
, Q0DPR1, Q10FF8, Q7G5X0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: July 22, 2015
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.