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Q40687

- GBB_ORYSJ

UniProt

Q40687 - GBB_ORYSJ

Protein

Guanine nucleotide-binding protein subunit beta

Gene

Os03g0669200

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 100 (01 Oct 2014)
      Sequence version 1 (01 Nov 1996)
      Previous versions | rss
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    Functioni

    Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.

    GO - Molecular functioni

    1. protein binding Source: IntAct
    2. signal transducer activity Source: UniProtKB-KW

    GO - Biological processi

    1. defense response to fungus, incompatible interaction Source: EnsemblPlants/Gramene
    2. endoplasmic reticulum unfolded protein response Source: EnsemblPlants/Gramene
    3. fruit development Source: EnsemblPlants/Gramene
    4. G-protein coupled receptor signaling pathway Source: Gramene
    5. jasmonic acid mediated signaling pathway Source: EnsemblPlants/Gramene
    6. lateral root development Source: EnsemblPlants/Gramene
    7. negative regulation of abscisic acid-activated signaling pathway Source: EnsemblPlants/Gramene
    8. organ morphogenesis Source: EnsemblPlants/Gramene
    9. reactive oxygen species metabolic process Source: EnsemblPlants/Gramene
    10. regulation of root development Source: EnsemblPlants/Gramene
    11. response to ethylene Source: EnsemblPlants/Gramene
    12. response to extracellular stimulus Source: EnsemblPlants/Gramene
    13. seed germination Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Transducer

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Guanine nucleotide-binding protein subunit beta
    Gene namesi
    Ordered Locus Names:Os03g0669200, LOC_Os03g46650
    ORF Names:OSJNBa0039O18.9
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 3

    Organism-specific databases

    GrameneiQ40687.

    Subcellular locationi

    GO - Cellular componenti

    1. Cul4-RING E3 ubiquitin ligase complex Source: EnsemblPlants/Gramene
    2. endoplasmic reticulum Source: EnsemblPlants/Gramene
    3. heterotrimeric G-protein complex Source: EnsemblPlants/Gramene

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 380380Guanine nucleotide-binding protein subunit betaPRO_0000127725Add
    BLAST

    Interactioni

    Subunit structurei

    G proteins are composed of 3 units, alpha, beta and gamma.

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    GPA1Q0DJ332EBI-1100119,EBI-1100098
    OSJNBa0026E05.11-1Q6YXX94EBI-1100119,EBI-1100089
    RGG1Q75WU14EBI-1100119,EBI-1100093

    Protein-protein interaction databases

    IntActiQ40687. 3 interactions.

    Structurei

    3D structure databases

    ProteinModelPortaliQ40687.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Repeati64 – 9431WD 1Add
    BLAST
    Repeati106 – 13631WD 2Add
    BLAST
    Repeati155 – 18632WD 3Add
    BLAST
    Repeati203 – 23432WD 4Add
    BLAST
    Repeati247 – 27731WD 5Add
    BLAST
    Repeati296 – 32631WD 6Add
    BLAST
    Repeati342 – 37231WD 7Add
    BLAST

    Sequence similaritiesi

    Belongs to the WD repeat G protein beta family.Curated
    Contains 7 WD repeats.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat, WD repeat

    Phylogenomic databases

    eggNOGiCOG2319.
    HOGENOMiHOG000176356.
    OMAiRIVMRPR.

    Family and domain databases

    Gene3Di2.130.10.10. 1 hit.
    InterProiIPR020472. G-protein_beta_WD-40_rep.
    IPR001632. Gprotein_B.
    IPR016346. Guanine_nucleotide-bd_bsu.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view]
    PfamiPF00400. WD40. 7 hits.
    [Graphical view]
    PIRSFiPIRSF002394. GN-bd_beta. 1 hit.
    PRINTSiPR00319. GPROTEINB.
    PR00320. GPROTEINBRPT.
    SMARTiSM00320. WD40. 7 hits.
    [Graphical view]
    SUPFAMiSSF50978. SSF50978. 1 hit.
    PROSITEiPS00678. WD_REPEATS_1. 3 hits.
    PS50082. WD_REPEATS_2. 5 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q40687-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASVAELKEK HAAATASVNS LRERLRQRRQ MLLDTDVERY SRTQGRTPVS    50
    FNPTDLVCCR TLQGHSGKVY SLDWTPEKNW IVSASQDGRL IVWNALTSQK 100
    THAIKLHCPW VMTCAFAPNG QSVACGGLDS ACSIFNLNSQ ADRDGNIPVS 150
    RILTGHKGYV SSCQYVPDQE TRLITSSGDQ TCVLWDVTTG QRISIFGGEF 200
    PSGHTADVLS LSINSSNSNM FVSGSCDATV RLWDIRIASR AVRTYHGHEG 250
    DINSVKFFPD GQRFGTGSDD GTCRLFDVRT GHQLQVYSRE PDRNDNELPT 300
    VTSIAFSISG RLLFAGYSNG DCYVWDTLLA EVVLNLGNLQ NSHEGRISCL 350
    GLSSDGSALC TGSWDKNLKI WAFSGHRKIV 380
    Length:380
    Mass (Da):41,752
    Last modified:November 1, 1996 - v1
    Checksum:i36CE374E2A3E8EB0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X89737 Genomic DNA. Translation: CAA61889.1.
    AC133930 Genomic DNA. Translation: AAP44640.1.
    PIRiT03765.

    Genome annotation databases

    EnsemblPlantsiOS03T0669200-01; OS03T0669200-01; OS03G0669200.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    X89737 Genomic DNA. Translation: CAA61889.1 .
    AC133930 Genomic DNA. Translation: AAP44640.1 .
    PIRi T03765.

    3D structure databases

    ProteinModelPortali Q40687.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q40687. 3 interactions.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS03T0669200-01 ; OS03T0669200-01 ; OS03G0669200 .

    Organism-specific databases

    Gramenei Q40687.

    Phylogenomic databases

    eggNOGi COG2319.
    HOGENOMi HOG000176356.
    OMAi RIVMRPR.

    Family and domain databases

    Gene3Di 2.130.10.10. 1 hit.
    InterProi IPR020472. G-protein_beta_WD-40_rep.
    IPR001632. Gprotein_B.
    IPR016346. Guanine_nucleotide-bd_bsu.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view ]
    Pfami PF00400. WD40. 7 hits.
    [Graphical view ]
    PIRSFi PIRSF002394. GN-bd_beta. 1 hit.
    PRINTSi PR00319. GPROTEINB.
    PR00320. GPROTEINBRPT.
    SMARTi SM00320. WD40. 7 hits.
    [Graphical view ]
    SUPFAMi SSF50978. SSF50978. 1 hit.
    PROSITEi PS00678. WD_REPEATS_1. 3 hits.
    PS50082. WD_REPEATS_2. 5 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular cloning and characterization of a cDNA for the beta subunit of a G protein from rice."
      Ishikawa A., Iwasaki Y., Asahi T.
      Plant Cell Physiol. 37:223-228(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species."
      The rice chromosome 3 sequencing consortium
      Buell C.R., Yuan Q., Ouyang S., Liu J., Zhu W., Wang A., Maiti R., Haas B., Wortman J., Pertea M., Jones K.M., Kim M., Overton L., Tsitrin T., Fadrosh D., Bera J., Weaver B., Jin S.
      , Johri S., Reardon M., Webb K., Hill J., Moffat K., Tallon L., Van Aken S., Lewis M., Utterback T., Feldblyum T., Zismann V., Iobst S., Hsiao J., de Vazeille A.R., Salzberg S.L., White O., Fraser C.M., Yu Y., Kim H., Rambo T., Currie J., Collura K., Kernodle-Thompson S., Wei F., Kudrna K., Ammiraju J.S.S., Luo M., Goicoechea J.L., Wing R.A., Henry D., Oates R., Palmer M., Pries G., Saski C., Simmons J., Soderlund C., Nelson W., de la Bastide M., Spiegel L., Nascimento L., Huang E., Preston R., Zutavern T., Palmer L., O'Shaughnessy A., Dike S., McCombie W.R., Minx P., Cordum H., Wilson R., Jin W., Lee H.R., Jiang J., Jackson S.
      Genome Res. 15:1284-1291(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiGBB_ORYSJ
    AccessioniPrimary (citable) accession number: Q40687
    Secondary accession number(s): Q7G5X0
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 15, 1998
    Last sequence update: November 1, 1996
    Last modified: October 1, 2014
    This is version 100 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3