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Q40677

- ALFC_ORYSJ

UniProt

Q40677 - ALFC_ORYSJ

Protein

Fructose-bisphosphate aldolase, chloroplastic

Gene

Os11g0171300

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 94 (01 Oct 2014)
      Sequence version 2 (25 Oct 2005)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate.

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei85 – 851SubstrateBy similarity
    Binding sitei175 – 1751SubstrateBy similarity
    Active sitei215 – 2151Proton acceptorBy similarity
    Active sitei257 – 2571Schiff-base intermediate with dihydroxyacetone-PBy similarity
    Sitei388 – 3881Necessary for preference for fructose 1,6-bisphosphate over fructose 1-phosphateBy similarity

    GO - Molecular functioni

    1. fructose-bisphosphate aldolase activity Source: Gramene

    GO - Biological processi

    1. glycolytic process Source: UniProtKB-UniPathway
    2. response to cadmium ion Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    Lyase

    Keywords - Biological processi

    Glycolysis

    Keywords - Ligandi

    Schiff base

    Enzyme and pathway databases

    UniPathwayiUPA00109; UER00183.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Fructose-bisphosphate aldolase, chloroplastic (EC:4.1.2.13)
    Short name:
    ALDP
    Gene namesi
    Ordered Locus Names:Os11g0171300, LOC_Os11g07020
    ORF Names:OsJ_33121
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 11

    Organism-specific databases

    GrameneiQ40677.

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. chloroplast envelope Source: EnsemblPlants/Gramene
    3. chloroplast stroma Source: EnsemblPlants/Gramene
    4. chloroplast thylakoid Source: EnsemblPlants/Gramene
    5. cytoplasm Source: Gramene
    6. cytosolic ribosome Source: EnsemblPlants/Gramene
    7. thylakoid lumen Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 3838Chloroplast1 PublicationAdd
    BLAST
    Chaini39 – 388350Fructose-bisphosphate aldolase, chloroplasticPRO_0000001112Add
    BLAST

    Proteomic databases

    PaxDbiQ40677.
    PRIDEiQ40677.

    Interactioni

    Protein-protein interaction databases

    IntActiQ40677. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ40677.
    SMRiQ40677. Positions 39-372.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG3588.
    HOGENOMiHOG000220876.
    KOiK01623.
    OMAiVEPEIML.

    Family and domain databases

    Gene3Di3.20.20.70. 1 hit.
    InterProiIPR013785. Aldolase_TIM.
    IPR000741. FBA_I.
    [Graphical view]
    PfamiPF00274. Glycolytic. 1 hit.
    [Graphical view]
    PROSITEiPS00158. ALDOLASE_CLASS_I. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q40677-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASATLLKSS FLPKKSEWGA TRQAAAPKPV TVSMVVRAGA YDDELVKTAK    50
    TIASPGRGIL AMDESNATCG KRLASIGLEN TEANRQAYRT LLVTAPGLGQ 100
    YISGAILFEE TLYQSTVDGK KIVDILTEQK IVPGIKVDKG LVPLAGSNNE 150
    SWCQGLDGLA SREAAYYQQG ARFAKWRTVV SIPNGPSELA VKEAAWGLAR 200
    YAAISQDNGL VPIVEPEILL DGEHGIDRTF EVAQKVWAET FFYMAENNVM 250
    FEGILLKPSM VTPGAECKDR ATPEQVSDYT LKLLHRRIPP AVPGIMFLSG 300
    GQSEVEATQN LNAMNQGPNP WHVSFSYARA LQNTCLKTWG GQPENVKAAQ 350
    DALLLRAKAN SLAQLGKYTS DGEAAEAKEG MFVKNYVY 388
    Length:388
    Mass (Da):42,006
    Last modified:October 25, 2005 - v2
    Checksum:i4FFF6FAE1F6619E0
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti156 – 1561L → R in BAA02730. (PubMed:8163192)Curated
    Sequence conflicti294 – 2941G → A in BAA02730. (PubMed:8163192)Curated
    Sequence conflicti352 – 3521A → R in BAA02730. (PubMed:8163192)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D13513 Genomic DNA. Translation: BAA02730.1.
    AC128643 Genomic DNA. Translation: AAX95072.1.
    DP000010 Genomic DNA. Translation: ABA91630.2.
    AP008217 Genomic DNA. Translation: BAF27707.1.
    CM000148 Genomic DNA. Translation: EAZ17583.1.
    AK104899 mRNA. Translation: BAG97016.1.
    PIRiT03679.
    RefSeqiNP_001065862.1. NM_001072394.1.
    UniGeneiOs.7988.

    Genome annotation databases

    EnsemblPlantsiOS11T0171300-01; OS11T0171300-01; OS11G0171300.
    GeneIDi4349897.
    KEGGiosa:4349897.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    D13513 Genomic DNA. Translation: BAA02730.1 .
    AC128643 Genomic DNA. Translation: AAX95072.1 .
    DP000010 Genomic DNA. Translation: ABA91630.2 .
    AP008217 Genomic DNA. Translation: BAF27707.1 .
    CM000148 Genomic DNA. Translation: EAZ17583.1 .
    AK104899 mRNA. Translation: BAG97016.1 .
    PIRi T03679.
    RefSeqi NP_001065862.1. NM_001072394.1.
    UniGenei Os.7988.

    3D structure databases

    ProteinModelPortali Q40677.
    SMRi Q40677. Positions 39-372.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi Q40677. 1 interaction.

    Proteomic databases

    PaxDbi Q40677.
    PRIDEi Q40677.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS11T0171300-01 ; OS11T0171300-01 ; OS11G0171300 .
    GeneIDi 4349897.
    KEGGi osa:4349897.

    Organism-specific databases

    Gramenei Q40677.

    Phylogenomic databases

    eggNOGi COG3588.
    HOGENOMi HOG000220876.
    KOi K01623.
    OMAi VEPEIML.

    Enzyme and pathway databases

    UniPathwayi UPA00109 ; UER00183 .

    Family and domain databases

    Gene3Di 3.20.20.70. 1 hit.
    InterProi IPR013785. Aldolase_TIM.
    IPR000741. FBA_I.
    [Graphical view ]
    Pfami PF00274. Glycolytic. 1 hit.
    [Graphical view ]
    PROSITEi PS00158. ALDOLASE_CLASS_I. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of the chloroplastic and cytoplasmic aldolase-encoding genes implicated the occurrence of multiple loci in rice."
      Tsutsumi K., Kagaya Y., Hidaka S., Suzuki J., Tokairin Y., Hirai T., Hu D., Ishikawa K., Ejiri S.
      Gene 141:215-220(1994) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications."
      The rice chromosomes 11 and 12 sequencing consortia
      BMC Biol. 3:20-20(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    4. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    5. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    6. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    7. "Proteomic analysis of rice leaf, stem and root tissues during growth course."
      Nozu Y., Tsugita A., Kamijo K.
      Proteomics 6:3665-3670(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: PROTEIN SEQUENCE [LARGE SCALE ANALYSIS] OF 39-45, IDENTIFICATION BY MASS SPECTROMETRY.
      Strain: cv. Nipponbare.

    Entry informationi

    Entry nameiALFC_ORYSJ
    AccessioniPrimary (citable) accession number: Q40677
    Secondary accession number(s): Q2R9Z9, Q53P95
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 15, 1998
    Last sequence update: October 25, 2005
    Last modified: October 1, 2014
    This is version 94 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Direct protein sequencing, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3