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Protein
Submitted name:

MADS-box protein

Gene

LOC107802634

Organism
Nicotiana tabacum (Common tobacco)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
MADS-box proteinImported
Submitted name:
floral homeotic protein PMADS 1Imported
Gene namesi
Name:LOC107802634Imported
OrganismiNicotiana tabacum (Common tobacco)Imported
Taxonomic identifieri4097 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeNicotianoideaeNicotianeaeNicotiana
Proteomesi
  • UP000084051 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

ProteinModelPortaliQ40513
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 61MADS-boxInterPro annotationAdd BLAST61
Domaini84 – 174K-boxInterPro annotationAdd BLAST91

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili77 – 111Sequence analysisAdd BLAST35
Coiled coili118 – 138Sequence analysisAdd BLAST21
Coiled coili147 – 167Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

KOiK09264

Family and domain databases

CDDicd00265 MADS_MEF2_like, 1 hit
Gene3Di3.40.1810.10, 1 hit
InterProiView protein in InterPro
IPR033896 MADS_MEF2-like
IPR002487 TF_Kbox
IPR002100 TF_MADSbox
IPR036879 TF_MADSbox_sf
PfamiView protein in Pfam
PF01486 K-box, 1 hit
PF00319 SRF-TF, 1 hit
PRINTSiPR00404 MADSDOMAIN
SMARTiView protein in SMART
SM00432 MADS, 1 hit
SUPFAMiSSF55455 SSF55455, 1 hit
PROSITEiView protein in PROSITE
PS51297 K_BOX, 1 hit
PS00350 MADS_BOX_1, 1 hit
PS50066 MADS_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q40513-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMISS
60 70 80 90 100
TGKLHEFISP SVTTKQLFDL YQKTVGVDLW NSHYEKMQEQ LRKLKDVNRN
110 120 130 140 150
LRREIRQRMG ESLNDLNYEQ LEELNENVDN SLKLIRERKY KVIGNQIDTY
160 170 180 190 200
KKKVRNVEEI HRNLLLEFDA RQEDPYGLVE QEGDYNSVLG FPNGGPRILA
210 220
LRLQPNHQPN HHLHSGGGSD ITTFALA
Length:227
Mass (Da):26,401
Last modified:November 1, 1996 - v1
Checksum:iFEF88A9A2AD7FEC4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X96428 mRNA Translation: CAA65288.1
RefSeqiNP_001312649.1, NM_001325720.1
XP_016481649.1, XM_016626163.1
UniGeneiNta.7400

Genome annotation databases

GeneIDi107802634
KEGGinta:107802634

Similar proteinsi

Entry informationi

Entry nameiQ40513_TOBAC
AccessioniPrimary (citable) accession number: Q40513
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 28, 2018
This is version 90 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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