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Protein

Peroxidase

Gene

rip1

Organism
Medicago truncatula (Barrel medic) (Medicago tribuloides)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

2 phenolic donor + H2O2 = 2 phenoxyl radical of the donor + 2 H2O.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase, Peroxidase

Keywords - Biological processi

Hydrogen peroxideUniRule annotation

Keywords - Ligandi

CalciumUniRule annotation, HemeUniRule annotationSAAS annotation, Iron, Metal-binding

Protein family/group databases

PeroxiBasei59. MtPrx01.

Names & Taxonomyi

Protein namesi
Recommended name:
PeroxidaseUniRule annotationSAAS annotation (EC:1.11.1.7UniRule annotationSAAS annotation)
Gene namesi
Name:rip1Imported
Ordered Locus Names:MTR_5g074860Imported
OrganismiMedicago truncatula (Barrel medic) (Medicago tribuloides)Imported
Taxonomic identifieri3880 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideaeTrifolieaeMedicago
Proteomesi
  • UP000002051 Componenti: Chromosome 5

Subcellular locationi

  • Secreted UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121UniRule annotationAdd
BLAST
Chaini22 – 325304PeroxidaseUniRule annotationPRO_5007364732Add
BLAST

Keywords - PTMi

Disulfide bondSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini28 – 325298PEROXIDASE_4InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily.UniRule annotation

Keywords - Domaini

SignalUniRule annotation

Phylogenomic databases

KOiK00430.
OMAiDFREAMV.

Family and domain databases

InterProiIPR010255. Haem_peroxidase.
IPR002016. Haem_peroxidase_pln/fun/bac.
IPR000823. Peroxidase_pln.
IPR019794. Peroxidases_AS.
IPR019793. Peroxidases_heam-ligand_BS.
[Graphical view]
PfamiPF00141. peroxidase. 1 hit.
[Graphical view]
PRINTSiPR00458. PEROXIDASE.
PR00461. PLPEROXIDASE.
SUPFAMiSSF48113. SSF48113. 1 hit.
PROSITEiPS00435. PEROXIDASE_1. 1 hit.
PS00436. PEROXIDASE_2. 1 hit.
PS50873. PEROXIDASE_4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q40372-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSSPCQIF LVFVMVTLVT SLIPSNALLT PHFYDNVCPQ ALPTIKSVVL
60 70 80 90 100
HAILREKRIG ASLLRLHFHD CFVNGCDGSV LLDDTPNFTG EKTALPNINS
110 120 130 140 150
IRGFSVVDEI KAAVDKVCKG PVVSCADILA TAARDSVAIL GGPQFFYNVL
160 170 180 190 200
LGRRDARTAS KAAANANLPS PTFNFSQLIS NFKSQGLNVK DLVALSGGHT
210 220 230 240 250
IGFARCTTFR NRIYNETNID PIFAASLRKT CPRNGGDNNL TPLDFTPTRV
260 270 280 290 300
ENTYYRDLLY KRGVLHSDQQ LFKGQGSESD KLVQLYSKNT FAFASDFKTS
310 320
LIKMGNIKPL TGRQGEIRLN CRRVR
Length:325
Mass (Da):35,682
Last modified:November 1, 1996 - v1
Checksum:i19FCD5E15A4770A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U16727 Genomic DNA. Translation: AAB48986.1.
CM001221 Genomic DNA. Translation: AES98948.1.
RefSeqiXP_003615990.1. XM_003615942.2.

Genome annotation databases

EnsemblPlantsiAES98948; AES98948; MTR_5g074860.
GeneIDi11426647.
GrameneiAES98948; AES98948; MTR_5g074860.
KEGGimtr:MTR_5g074860.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U16727 Genomic DNA. Translation: AAB48986.1.
CM001221 Genomic DNA. Translation: AES98948.1.
RefSeqiXP_003615990.1. XM_003615942.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

PeroxiBasei59. MtPrx01.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAES98948; AES98948; MTR_5g074860.
GeneIDi11426647.
GrameneiAES98948; AES98948; MTR_5g074860.
KEGGimtr:MTR_5g074860.

Phylogenomic databases

KOiK00430.
OMAiDFREAMV.

Family and domain databases

InterProiIPR010255. Haem_peroxidase.
IPR002016. Haem_peroxidase_pln/fun/bac.
IPR000823. Peroxidase_pln.
IPR019794. Peroxidases_AS.
IPR019793. Peroxidases_heam-ligand_BS.
[Graphical view]
PfamiPF00141. peroxidase. 1 hit.
[Graphical view]
PRINTSiPR00458. PEROXIDASE.
PR00461. PLPEROXIDASE.
SUPFAMiSSF48113. SSF48113. 1 hit.
PROSITEiPS00435. PEROXIDASE_1. 1 hit.
PS00436. PEROXIDASE_2. 1 hit.
PS50873. PEROXIDASE_4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Transient induction of a peroxidase gene in Medicago truncatula precedes infection by Rhizobium meliloti."
    Cook D., Dreyer D., Bonnet D., Howell M., Nony E., VandenBosch K.
    Plant Cell 7:43-55(1995) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A17Imported.
    Tissue: RootImported.
  2. "Gene structure and differential regulation of the Rhizobium-induced peroxidase gene rip1."
    Peng H.M., Dreyer D.A., VandenBosch K.A., Cook D.
    Plant Physiol. 112:1437-1446(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: A17Imported.
    Tissue: RootImported.
  3. "The Medicago genome provides insight into the evolution of rhizobial symbioses."
    Young N.D., Debelle F., Oldroyd G.E.D., Geurts R., Cannon S.B., Udvardi M.K., Benedito V.A., Mayer K.F.X., Gouzy J., Schoof H., Van de Peer Y., Proost S., Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S., Krishnakumar V.
    , Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D., Naoumkina M.A., Rosen B., Silverstein K.A.T., Tang H., Rombauts S., Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A., Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R., Deshpande S., Dai X., Doyle J.J., Dudez A.-M., Farmer A.D., Fouteau S., Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J., Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.-H., Jing Y., Jocker A., Kenton S.M., Kim D.-J., Klee K., Lai H., Lang C., Lin S., Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L., Mun J.-H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R., Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E., Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T., Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R., Sinharoy S., Sterck L., Viollet A., Wang B.-B., Wang K., Wang M., Wang X., Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B., Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A., Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F., Town C.D., Roe B.A.
    Nature 480:520-524(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A17Imported and cv. Jemalong A17Imported.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: A17.
  5. EnsemblPlants
    Submitted (APR-2015) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: cv. Jemalong A17Imported.

Entry informationi

Entry nameiQ40372_MEDTR
AccessioniPrimary (citable) accession number: Q40372
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 6, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.