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Protein
Submitted name:

Barley (H.vulgare) alpha-amylase 2

Gene
N/A
Organism
Hordeum vulgare (Barley)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei203 – 2031NucleophileUniRule annotation
Active sitei228 – 2281Proton donorUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Barley (H.vulgare) alpha-amylase 2Imported
OrganismiHordeum vulgare (Barley)Imported
Taxonomic identifieri4513 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladePooideaeTriticodaeTriticeaeHordeinaeHordeum

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 437414Sequence analysisPRO_5004231509Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi4513.MLOC_56170.1.

Structurei

3D structure databases

ProteinModelPortaliQ40018.
SMRiQ40018. Positions 24-427.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 366342AamyInterPro annotationAdd
BLAST
Domaini367 – 42761Alpha-amyl_C2InterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG0471. Eukaryota.
COG0366. LUCA.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q40018-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKKSHICCF SLLLLLFAGL ASGHQVLFQG FNWESWKQSG GWYNMMLGKV
60 70 80 90 100
DDIAAAGVTH VWLPPPSYSV AGEGYMPGRL YDIDASKYGN AAELKSLIGA
110 120 130 140 150
LHGNGVQAIA DIVINHLCAD YKDSRGIYCI YEGGTSDSRL DWGPHMICRD
160 170 180 190 200
DTKYSDGTAN LDTRADYADA PDIDHLNHRV QSELKEWLLW LKSDLGFDAW
210 220 230 240 250
PLDFARGYSA EMAKVYIDGT SPSLAVAEIW DGMVPGGDGK PNYDQDAHRQ
260 270 280 290 300
NLVNWVDKVG GRASAGMVFD FTTKGILNVA VEGELWRLIG PASKAPGVMG
310 320 330 340 350
WWPAKAVTFI DNHDTGSNGS KWPVPSDKIM QGYAYILTHS GIPCIFYDHF
360 370 380 390 400
FNLGFKDEIA ALVAIRKRNG ITATSALKIL MHDGDAYVAE IDSKVVVKIG
410 420 430
SRYELGAVIP ARFVTSANGK DYAVWEKIAA GPTLQRS
Length:437
Mass (Da):47,811
Last modified:November 1, 1996 - v1
Checksum:i68866B0A1A650656
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M17127 Genomic DNA. Translation: AAA32928.1.
PIRiS07040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M17127 Genomic DNA. Translation: AAA32928.1.
PIRiS07040.

3D structure databases

ProteinModelPortaliQ40018.
SMRiQ40018. Positions 24-427.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi4513.MLOC_56170.1.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG0471. Eukaryota.
COG0366. LUCA.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR012850. A-amylase_bs_C.
IPR013775. A-amylase_pln.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013780. Glyco_hydro_b.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF07821. Alpha-amyl_C2. 1 hit.
PF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001028. Alph-amls_plant. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
SM00810. Alpha-amyl_C2. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ40018_HORVU
AccessioniPrimary (citable) accession number: Q40018
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 11, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.