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Q3ZX32

- Q3ZX32_DEHMC

UniProt

Q3ZX32 - Q3ZX32_DEHMC

Protein
Submitted name:

D-ala D-alanine ligase

Gene

ddl

Organism
Dehalococcoides mccartyi (strain CBDB1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (27 Sep 2005)
      Previous versions | rss
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    Functioni

    Cell wall formation.SAAS annotation

    Catalytic activityi

    ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.SAAS annotation

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.SAAS annotation

    Pathwayi

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. D-alanine-D-alanine ligase activity Source: UniProtKB-EC
    3. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. peptidoglycan biosynthetic process Source: UniProtKB-UniPathway
    2. regulation of cell shape Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseSAAS annotationImported

    Keywords - Biological processi

    Cell shape, Cell wall biogenesis/degradationSAAS annotation, Peptidoglycan synthesisSAAS annotation

    Keywords - Ligandi

    ATP-bindingSAAS annotation, MagnesiumSAAS annotation, ManganeseSAAS annotation, Metal-bindingSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciDSP255470:GJXW-520-MONOMER.
    UniPathwayiUPA00219.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    D-ala D-alanine ligaseImported (EC:6.3.2.4Imported)
    Gene namesi
    Name:ddlImported
    Ordered Locus Names:cbdbA616Imported
    OrganismiDehalococcoides mccartyi (strain CBDB1)Imported
    Taxonomic identifieri255470 [NCBI]
    Taxonomic lineageiBacteriaChloroflexiDehalococcoidiaDehalococcoidalesDehalococcoidaceaeDehalococcoides
    ProteomesiUP000000433: Chromosome

    Subcellular locationi

    Cytoplasm SAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    Interactioni

    Protein-protein interaction databases

    STRINGi255470.cbdb_A616.

    Structurei

    3D structure databases

    ProteinModelPortaliQ3ZX32.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains ATP-grasp domain.SAAS annotation

    Phylogenomic databases

    eggNOGiCOG1181.
    KOiK01921.
    OMAiFLEVNPL.
    OrthoDBiEOG66MQKK.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    InterProiIPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR000291. D-Ala_lig_Van_CS.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view]
    PANTHERiPTHR23132. PTHR23132. 1 hit.
    PfamiPF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF52440. SSF52440. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    PS00844. DALA_DALA_LIGASE_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q3ZX32-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRIGLSYDLK LALTPVTGGP DDALEEYDSP ETVEAITNSL TAAGHAVYRL    50
    GGGKEFLRKV QEQKLDLVFN ISEGLGNYRS REAQIPGVLE MLDIPYTGSD 100
    PQTLAICLDK PLTKKLVAGA GVKTAKWQLV SNCEELSTID WSDFPLPAFL 150
    KPACEGSSKG VRFASRAEST DEIMRMATEL LTTYNQPVLV EEFINGDEIT 200
    VGVIGNDKPK VLGIMRIVPK TKADYFVYSI EIKRNWRQMV EYEVPAALPA 250
    KTLARIEKAT LDAYRVLECH DLCRMDFRVS PDGTPYFLEV NPLPGLNPVS 300
    GDLPIMASKL GISHADLVLE ILNTAIARHN LVAADCLA 338
    Length:338
    Mass (Da):37,100
    Last modified:September 27, 2005 - v1
    Checksum:iB9B118C4396E8537
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ965256 Genomic DNA. Translation: CAI82790.1.
    RefSeqiWP_011309141.1. NC_007356.1.
    YP_307706.1. NC_007356.1.

    Genome annotation databases

    EnsemblBacteriaiCAI82790; CAI82790; cbdbA616.
    GeneIDi3623173.
    KEGGideh:cbdb_A616.
    PATRICi21611345. VBIDehSp125902_0517.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AJ965256 Genomic DNA. Translation: CAI82790.1 .
    RefSeqi WP_011309141.1. NC_007356.1.
    YP_307706.1. NC_007356.1.

    3D structure databases

    ProteinModelPortali Q3ZX32.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 255470.cbdb_A616.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAI82790 ; CAI82790 ; cbdbA616 .
    GeneIDi 3623173.
    KEGGi deh:cbdb_A616.
    PATRICi 21611345. VBIDehSp125902_0517.

    Phylogenomic databases

    eggNOGi COG1181.
    KOi K01921.
    OMAi FLEVNPL.
    OrthoDBi EOG66MQKK.

    Enzyme and pathway databases

    UniPathwayi UPA00219 .
    BioCyci DSP255470:GJXW-520-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    InterProi IPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR000291. D-Ala_lig_Van_CS.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view ]
    PANTHERi PTHR23132. PTHR23132. 1 hit.
    Pfami PF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52440. SSF52440. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    PS00844. DALA_DALA_LIGASE_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the chlorinated compound-respiring bacterium Dehalococcoides species strain CBDB1."
      Kube M., Beck A., Zinder S.H., Kuhl H., Reinhardt R., Adrian L.
      Nat. Biotechnol. 23:1269-1273(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: CBDB1Imported.

    Entry informationi

    Entry nameiQ3ZX32_DEHMC
    AccessioniPrimary (citable) accession number: Q3ZX32
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 27, 2005
    Last sequence update: September 27, 2005
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3